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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Karolina,
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<div>You can stop after any step in mr_rosetta is completely finished and restart from there. At the time of restarting you could specify a different number of processors.</div>
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<div> To stop mr_rosetta you would abort it in the GUI or use this procedure</div>
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<h5><u>Stopping mr_rosetta</u></h5>
<p><a name="anch34" id="Stopping_mr_rosetta_2"></a>If you create a file "STOPWIZARD" in the top level directory (i.e., MR_ROSETTA_1/), then each job in the entire process will stop as soon as any Phenix part of the process takes over (i.e., as soon as Rosetta
jobs finish).</p>
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<a name="anch35" id="Installing_Rosetta_for_use_with_mr_rosetta"></a></p>
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<div>To continue on you would use this approach:</div>
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<h5><u>Viewing solutions and restarting with saved solutions</u></h5>
<p><a name="anch19" id="Viewing_solutions_and_restarting_with_saved_solutions__2"></a>At each stage, existing solutions are saved as a python "pkl" file and can be read back in to mr_rosetta with "mr_rosetta_solutions=xxx.pkl". These solutions can be displayed
with "display_solutions=True". Existing solutions are stored as "mr_rosetta_solution" objects which keep track of the model and its history, the map_coefficients and labels, etc. These can be read in to mr_rosetta with the keyword "mr_rosetta_solutions=results.pkl"
and used as inputs for subsequent runs, starting at any step that can use those solutions. NOTE: You can re-start mr_rosetta only at the beginning of major stages (like "place_model", "rosetta_rebuild" etc)...but not in between. Normally at the end of a major
stage a .pkl file is written out with text like "type this to see all the results". You can almost always give your original command, the command "start_point=xxx" and "mr_rosetta_solutions=my_pickle_file.pkl" and it should then continue on from there.</p>
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<div>Let me know if that doesn't do it!</div>
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<div>All the best,</div>
<div>Tom T</div>
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<div id="divRpF881524" style="direction: ltr; "><font face="Tahoma" size="2" color="#000000"><b>From:</b> phenixbb-bounces@phenix-online.org [phenixbb-bounces@phenix-online.org] on behalf of Karolina Michalska [dziuba@amu.edu.pl]<br>
<b>Sent:</b> Tuesday, June 18, 2013 2:03 PM<br>
<b>To:</b> phenixbb@phenix-online.org<br>
<b>Subject:</b> [phenixbb] mr_rosetta pause & resume<br>
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<p>Hello everybody,</p>
<p>Is there a way to pause an mr_rosetta run and resume it with a different number of processors?</p>
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<p>Thanks,</p>
<p>Karolina</p>
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