<div dir="ltr">Thank you all. 狢 do not know what solved my issue but I deleted many UNK residues that though having a lower number came after the end of my chain in the pbd file and now it is working. 狢 had tried real space refine and moved it manually but without avail. 瓱aybe this version of coot 0.6.2-pre-1 is unhappy with pdb from phenix autobuild/refine.</div>
<div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Aug 20, 2013 at 3:18 PM, Ursula Schulze-Gahmen <span dir="ltr"><<a href="mailto:uschulze-gahmen@lbl.gov" target="_blank">uschulze-gahmen@lbl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div>Heather,<br><br></div>I am using the stand alone version of coot and I am adding terminal residues all the time. I have the same experience as you do , that the residue is usually added far away from the end of my chain. I then move it into a sensible position relative to the chain end and refine the geometry on coot. I have never seen the residue moving back to its original position. Perhaps try the stand alone version of coot and see if it works there for you.<br>
<br></div>Ursula<br></div><div class="gmail_extra"><br><br><div class="gmail_quote"><div><div class="h5">On Tue, Aug 20, 2013 at 11:53 AM, Heather L Condurso <span dir="ltr"><<a href="mailto:condurso@bc.edu" target="_blank">condurso@bc.edu</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"><div dir="ltr">Dear all,<div><br></div><div>I have been trying to add a residue to my model in coot for hours now. �The add terminal residue function adds a residue far from the end of my chain and I've tried moving it manually and it keeps going back and it never makes a bond between the two amino acids. 狢s there a trick in coot or a better way to do this in phenix? �</div>
<div><br></div><div>Thanks,</div><div>Heather Condurso</div><div>UF-Department of Chemistry</div></div>
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<br></div></blockquote></div><span class="HOEnZb"><font color="#888888"><br><br clear="all"><br>-- <br>Ursula Schulze-Gahmen, Ph.D.<br>Assistant Researcher<br>UC Berkeley, QB3<br>356 Stanley Hall #3220<br>Berkeley, CA 94720-3220<br>
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