<div dir="ltr"><div class="gmail_extra">On Wed, Aug 28, 2013 at 8:45 AM, Matthew Franklin <span dir="ltr"><<a href="mailto:mfranklin@nysbc.org" target="_blank">mfranklin@nysbc.org</a>></span> wrote:<br><div class="gmail_quote">
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<div>From your Coot window, you can go to Edit->Preferences, then
select the "Map Colours" tab in the resulting window.� You should
see radio buttons for "Coot colours" and "O colours".� The way
these work is that you select the desired colo(u)r for the
positive difference density (e.g. green).� The negative contour is
then 120 degrees ahead (clockwise) on the color wheel if you
choose Coot colors, or 120 degrees behind if you choose O colors.<br>
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It looks to me like you want positive to be green, and negative to
be red.� So I think you want Coot colors, and positive set to
green.� At the moment, it appears that you have O colors.<br></div></div></blockquote><div><br></div><div style>Excellent suggestion. �Heather, does this solve the problem?</div><div><br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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I have no idea if your selections will be kept the next time
Phenix opens a window for you.� Probably not.<br></div></div></blockquote><div><br></div><div style>The Phenix plugin adjusts a few of the settings, but it should leave this one alone - only the default map colors are set, not the other display options. �(Although the color for the negative contours will just be ignored anyway, so I'm taking those out of the Phenix preferences.) �In general most personal Coot settings should be unmolested - if not, please let me know.</div>
<div style><br></div><div style>-Nat</div></div></div></div>