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<font face="Helvetica, Arial, sans-serif">Dear all,<br>
<br>
I tried to install phenix.rosetta_refine for a recently solved
structure, which only diffracts up to 3.5-4.0 Angstrom
(anisotropic). <br>
However, I was unable to get the programs correctly set up.<br>
<br>
I first tried to compile phenix 1.8.4-1496 from source according
to this documentation :
<a class="moz-txt-link-freetext" href="http://www.phenix-online.org/version_docs/dev-1500/rosetta_refine.htm">http://www.phenix-online.org/version_docs/dev-1500/rosetta_refine.htm</a>.
The build process failed during GTK2 building, without an obvious
explanation (error code 1, no missing libraries ...)<br>
I then realised that the developer version are potentially more
suitable, as they seem to be prepared for this. I installed the
binary from 1523 and tried to start the building process from
there with <br>
</font>
<pre class="literal-block" style="color: rgb(0, 0, 0); font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: -webkit-left; text-indent: 0px; text-transform: none; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><tt>rosetta.build_phenix_interface nproc=X</tt><font face="Helvetica, Arial, sans-serif">
</font></pre>
<pre class="literal-block" style="color: rgb(0, 0, 0); font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: -webkit-left; text-indent: 0px; text-transform: none; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><font face="Helvetica, Arial, sans-serif">Unfortunatelly Rosetta 3.5 seems to have a different folder structure. There is no main subfolder, instead there are "rosetta_sources", "rosetta_tools" and so one.
After a fast "cp rosetta_sources main/source/" it worked a bit but still exited with: </font></pre>
<font face="Helvetica, Arial, sans-serif"><br>
</font><tt>scons: *** Error converting option: extras</tt><tt><br>
</tt><tt>Invalid value(s) for option: python </tt><tt><br>
</tt><tt>File ..... /setup.py, line 72, in setup_build_options</tt><font
face="Helvetica, Arial, sans-serif"><br>
<br>
I have the following questions:<br>
1) Am I right to assume that I do NOT have to recompile the dev
1523 (1520 states "Python shared library for linux) on Linux?<br>
2) Which rosetta version do I have to use? Does 3.5 work? There is
no 3.6 on rosettacommons... (or is it hidden?)<br>
<br>
Regards,<br>
Jan <br>
<br>
<br>
<br>
</font>
<pre class="moz-signature" cols="72"><font face="Helvetica, Arial, sans-serif">--
Dr. Jan Gebauer
AG Prof. Baumann
Institut für Biochemie / Uni-Köln
Otto-Fischer-Str. 12-14 / 50674 Köln
Fon: +49 (221) 470 3212
Fax: +49 (221) 470 5066
<a class="moz-txt-link-freetext" href="http://px.uni-koeln.de/">http://px.uni-koeln.de/</a></font></pre>
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