<div dir="ltr">I will fire up an Ubuntu 12.04 virtual machine and try to reproduce this, but it's going to take a while. If you could send me your input files off-list, it will help to verify whether the problem is specific to Ubuntu, or something in your data that isn't being handled properly.<div>
<br></div><div>thanks,</div><div>Nat</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Oct 31, 2013 at 8:48 AM, Jan Gebauer <span dir="ltr"><<a href="mailto:jan.gebauer@uni-koeln.de" target="_blank">jan.gebauer@uni-koeln.de</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
Dear all,<br>
<br>
I'm trying to get rosetta_refine working on ubuntu 12.04 LTS.<br>
<br>
This was the (latest) way I tried it:<br>
<br>
1) Downloaded phenix-dev-1523 binary & installed it via
installer in /usr/local/science/phenix4rosetta/phenix-dev-1523<br>
2) Downloaded rosetta 2031wk42 and extracted it in
/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle<br>
3) Inserted into phenix_env.sh<br>
<font face="Courier New, Courier, monospace">export
ROSETTA_BIN=/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle/main/source/bin<br>
export
PHENIX_ROSETTA_PATH=/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle/<br>
export
ROSETTA_BIN=/usr/local/science/phenix4rosetta/rosetta_2013wk42_bundle/main/database<br>
</font>4) sources phenix_env.sh<br>
5) build the interface via<br>
<font face="Courier New, Courier, monospace">rosetta.build_phenix_interface
nproc=4</font><br>
6) exceute the refinement via phenix.rosetta_refine phasermodel.pdb
data.mtz nproc=4<br>
<br>
The programm runs fine, up to the point where it should generate
models via rosetta, it then stops and crashes.<br>
I have attached some logfiles<br>
<br>
Has anyone managed to run rosetta_refine on Ubuntu? Which phenix and
rosetta versions did you use? Ist there anything wrong on my above
mentioned build protocol?<br>
<br>
I'm thankful for any help.<br>
<br>
Regards,<br>
Jan Gebauer<span class="HOEnZb"><font color="#888888"><br>
<br>
<br>
<br>
<pre cols="72">--
Dr. Jan Gebauer
AG Prof. Baumann
Institut für Biochemie / Uni-Köln
Otto-Fischer-Str. 12-14 / 50674 Köln
Fon: <a href="tel:%2B49%20%28221%29%20470%203212" value="+492214703212" target="_blank">+49 (221) 470 3212</a>
Fax: <a href="tel:%2B49%20%28221%29%20470%205066" value="+492214705066" target="_blank">+49 (221) 470 5066</a>
<a href="http://px.uni-koeln.de/" target="_blank">http://px.uni-koeln.de/</a></pre>
</font></span></div>
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