<div dir="ltr">Hi, Jobi, <div><br></div><div>I think you may need to change the coot path for Phenix. </div><div><br></div><div>It can be done easily through the GUI, File, preferences, Coot Path: </div><div><br></div><div>
Best, </div><div><br></div><div>Zheng</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Dec 5, 2013 at 3:36 AM, Nathaniel Echols <span dir="ltr"><<a href="mailto:nechols@lbl.gov" target="_blank">nechols@lbl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="im">On Tue, Dec 3, 2013 at 10:54 PM, Jobichen Chacko <span dir="ltr"><<a href="mailto:jobichenc@gmail.com" target="_blank">jobichenc@gmail.com</a>></span> wrote:<br>
</div><div class="gmail_extra"><div class="gmail_quote"><div class="im">
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">I recently upgraded to latest version of coot (version0.7.2). When I<br>
try to do the Real space refine zone option, coot is giving the<br>
following complaint (Refinement setup failure. Failed to find<br>
restraints for PROLYSILE).<br>
<br>
But it works fine when I open coot separately from a terminal and read<br>
the pdb and mtz file.<br></blockquote><div><br></div></div><div>Phenix will instruct Coot to load user-provided CIF files, but I didn't think we interfere with Coot's own restraints otherwise. Can you please send me the console output of Coot a) when launched from Phenix b) when launched by itself?</div>
<div><br></div><div>-Nat</div></div></div></div>
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