<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:10pt"><div id="yiv7398296616"><div><div style="color:#000;background-color:#fff;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:10pt;">hi, <br>replying for the sake of posterity.<br>the slow export/reduce seems to be related to a malformed input model.<br>the segids are ok but there are some different segids that have the same chain.<br>setting the chain to empty for everything resolved the issue.<br>Using the malformed chain model took 35 hours (if it finished).<br clear="none">Using the no chain model took 5 hours.<br clear="none"><div id="yiv7398296616yui_3_13_0_ym1_9_1390433658735_9"><span>thanks<br>jpd<br clear="none"></span></div><div id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21480"><br
id="yiv7398296616yui_3_13_0_ym1_9_1390433658735_11" clear="none"></div> <div class="yiv7398296616yui_3_13_0_ym1_9_1390433658735_13" id="yiv7398296616yui_3_13_0_ym1_9_1390433658735_14" style="font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:10pt;"> <div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21401" id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21437" style="font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:12pt;"> <div class="yiv7398296616yqt1922881029" id="yiv7398296616yqt80954"><div dir="ltr" id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21436"> <hr size="1"> <font id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21479" face="Arial" size="2"> <b><span style="font-weight:bold;">From:</span></b> jp d <yoyoq@yahoo.com><br clear="none"> <b><span style="font-weight:bold;">To:</span></b> PHENIX user mailing list
<phenixbb@phenix-online.org> <br clear="none"> <b><span style="font-weight:bold;">Sent:</span></b> Friday, January 17, 2014 9:53 AM<br clear="none"> <b id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21597"><span id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21596" style="font-weight:bold;">Subject:</span></b> [phenixbb] exporting results, reduce<br clear="none"> </font> </div> <div class="yiv7398296616y_msg_container" id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21442"><br clear="none"><div id="yiv7398296616"><div id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21441"><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21407" id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21440" style="color:#000;background-color:#fff;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:10pt;"><div id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21478">hi,</div><div
id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21477">we have a large complex at low resolution (7A) and just want <br clear="none"></div><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21408" id="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21439" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;background-color:transparent;font-style:normal;">to see general conformational changes. Occasionally phenix</div><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21409" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;background-color:transparent;font-style:normal;">gets stuck at 'Exporting Results' and top shows 'reduce' running</div><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21410" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:HelveticaNeue, Helvetica
Neue, Helvetica, Arial, Lucida Grande, sans-serif;background-color:transparent;font-style:normal;">and using
lots of RAM . so much RAM that it starts using swap.</div><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21411" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;background-color:transparent;font-style:normal;">is there a way to bypass or limit the reduce step.</div><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21412" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;background-color:transparent;font-style:normal;">thanks</div><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21413" style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;background-color:transparent;font-style:normal;">jpd<br clear="none"></div><div class="yiv7398296616yui_3_13_0_ym1_1_1390433658735_21414"
style="color:rgb(0, 0, 0);font-size:13.3333px;font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;background-color:transparent;font-style:normal;"></div></div></div></div><br clear="none">_______________________________________________<br clear="none">phenixbb mailing list<br clear="none"><a rel="nofollow" shape="rect" ymailto="mailto:phenixbb@phenix-online.org" target="_blank" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br clear="none"><a rel="nofollow" shape="rect" target="_blank" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a><br clear="none"><br clear="none"><br clear="none"></div></div> </div> </div> </div></div></div></div></body></html>