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Hi Afshan,<br>
<br>
it not a good idea to do this for reasons explained in great details
here:<br>
<br>
<a class="moz-txt-link-freetext" href="http://www.phenix-online.org/newsletter/CCN_2012_01.pdf">http://www.phenix-online.org/newsletter/CCN_2012_01.pdf</a><br>
see "On contribution of hydrogen atoms to X-ray scattering".<br>
<br>
Yes, the easiest is <br>
<br>
phenix.reduce -trim model_with_h.pdb > model_no_h.pdb<br>
<br>
If you do this make sure you update refinement statistics (including
R-factors!).<br>
<br>
All the best,<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 2/6/14, 9:12 AM, Afshan Begum wrote:<br>
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<div> Dear Experts,<br>
<br>
Could you kindly tell me how can i remove hydrogen from my
coordinate. Actually i refine my structure with phenix along
all hydrogen now its almost done but before submitting the
molecule into PDB data bank i want to remove hydrogen from the
coordinate which i do not know how to do, suggestion would be
appreciated<br>
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