<div dir="ltr">On Wed, May 7, 2014 at 2:05 PM, Marcelo Carlos Sousa <span dir="ltr"><<a href="mailto:Marcelo.Sousa@colorado.edu" target="_blank">Marcelo.Sousa@colorado.edu</a>></span> wrote:<br><div class="gmail_extra">
<div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word">
<div>It turned out that if you point phenix (in preferences) to the wrapper script inside the coot application package:</div><div><div>/Applications/ccp4-6.4.0/coot.app/Contents/coot/bin/coot</div><div>and start the application by clicking on the Phenix icon and then opening refinement results in coot, then the coot dictionaries do not load and there is a problem</div>
<div>However, if you start phenix form the terminal then everything is fine.</div><div>Finally, if you point phenix to a different file in the coot application package:<div>/Applications/ccp4-6.4.0/coot.app/Contents/MacOS/coot</div>
</div></div></div></blockquote><div><br></div><div>This is already handled automatically - I didn't think anyone would dig into the .app bundle for the specific command. If you simply specify /Applications/ccp4-6.4.0/coot.app (or any other .app), Phenix will look for Contents/MacOS/coot inside.</div>
<div><br></div><div>-Nat</div></div></div></div>