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Thanks Michael,<br>
<br>
correct, as discussed this morning, auto-open in Coot will not work
for FEM maps, you need to load them manually. Thanks for feedback!<br>
<br>
Pavel<br>
<br>
<br>
<div class="moz-cite-prefix">On 5/8/14, 8:38 AM, R.M. Garavito
wrote:<br>
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Pavel,
<div><br>
</div>
<div>Just to let you know, the auto-open function works fine on
the FEM mtz in the Mac version. Makes a nice looking map which
I am looking at now in the context of earlier maps.</div>
<div><br>
</div>
<div>Michael</div>
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<div>
<div>On May 8, 2014, at 11:13 AM, Pavel Afonine <<a
moz-do-not-send="true" href="mailto:pafonine@lbl.gov">pafonine@lbl.gov</a>>
wrote:</div>
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<div bgcolor="#FFFFFF" text="#000000"> Hi Parker,<br>
<br>
this requires loading map manually (not using auto-open,
as Nat pointed out):<br>
<br>
Start Coot -><br>
File -><br>
Open MTZ, mmCIF, fcf or phs -><br>
Choose file fem.mtz or whatever you called it, hit Open
-><br>
In popped menu "Column Label Assignment" choose:<br>
Amplitudes: FEM<br>
Phases: PHIFEM<br>
-> hit OK<br>
<br>
Contouring at 1sigma is universally good. Going down to 0
should not change the appearance much.<br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 5/8/14, 8:01 AM, de Waal,
Parker wrote:<br>
</div>
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<div class="WordSection1">
<p class="MsoNormal">Hello Everyone,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I’m having trouble opening the
map file generated by phenix.fem in coot. Each time
I try and load the .mtz file the follow error occurs
‘Failed to find any suitable F/phi columns in the
MTZ file’.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Dumping the mtz file I can see:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Col Sort Min Max
Num % Mean Mean Resolution Type
Column<o:p></o:p></p>
<p class="MsoNormal">num order Missing
complete abs. Low High label<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"> 1 NONE 0 33 0
100.00 12.1 12.1 114.15 3.31 H H<o:p></o:p></p>
<p class="MsoNormal"> 2 NONE 0 33 0
100.00 12.8 12.8 114.15 3.31 H K<o:p></o:p></p>
<p class="MsoNormal"> 3 NONE 0 137 0
100.00 51.4 51.4 114.15 3.31 H L<o:p></o:p></p>
<p class="MsoNormal"> 4 NONE 0.0 10551.1 22963
71.24 406.13 406.13 39.60 3.31 F 2mFoDFc<o:p></o:p></p>
<p class="MsoNormal"> 5 NONE -180.0 180.0 22963
71.24 0.98 89.81 39.60 3.31 P
PHI2mFoDFc<o:p></o:p></p>
<p class="MsoNormal"> 6 NONE 5.2 51589.8 0
100.00 1602.72 1602.72 114.15 3.31 F FEM<o:p></o:p></p>
<p class="MsoNormal"> 7 NONE -180.0 180.0 0
100.00 0.32 89.74 114.15 3.31 P PHIFEM<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">If someone could help me to
rename these columns to a coot friendly format so
that I would be greatly appreciative. <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Best,<o:p></o:p></p>
<p class="MsoNormal">Parker<o:p></o:p></p>
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