<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Pavel,<div><br></div><div>Just to let you know, the auto-open function works fine on the FEM mtz in the Mac version. Makes a nice looking map which I am looking at now in the context of earlier maps.</div><div><br></div><div>Michael</div><div><br><div apple-content-edited="true">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Courier" size="3" style="font: normal normal normal 12px/normal Courier; font-family: Courier; font-size: 12px; "><i style="font-family: Courier; font-size: 12px; font-style: italic; "><span class="Apple-style-span" style="font-family: Courier; font-size: 12px; font-style: italic; ">****************************************************************</span></i></font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Courier" size="3" style="font: normal normal normal 12px/normal Courier; font-family: Courier; font-size: 12px; "><i style="font-family: Courier; font-size: 12px; font-style: italic; "><span class="Apple-style-span" style="font-family: Courier; font-size: 12px; font-style: italic; ">R. Michael Garavito, Ph.D.</span></i></font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Courier" size="3" style="font: normal normal normal 12px/normal Courier; font-family: Courier; font-size: 12px; "><i style="font-family: Courier; font-size: 12px; font-style: italic; "><span class="Apple-style-span" style="font-family: Courier; font-size: 12px; font-style: italic; ">Professor of </span><span class="Apple-style-span" style="font-family: Courier; font-size: 12px; font-style: italic; ">Biochemistry & Molecular Biology</span></i></font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Courier" size="3" style="font: normal normal normal 12px/normal Courier; font-family: Courier; font-size: 12px; "><i style="font-family: Courier; font-size: 12px; font-style: italic; "><span class="Apple-style-span" style="font-family: Courier; font-size: 12px; font-style: italic; ">603 Wilson Rd., Rm. 513 </span><span class="Apple-converted-space"><span class="Apple-style-span" style="font-family: Courier; 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font-size: 12px; font-style: italic; "><a href="mailto:garavito@msu.edu">garavito@msu.edu</a></span></i></font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Courier" size="3" style="font: normal normal normal 12px/normal Courier; font-family: Courier; font-size: 12px; "><i style="font-family: Courier; font-size: 12px; font-style: italic; "><span class="Apple-style-span" style="font-family: Courier; font-size: 12px; font-style: italic; ">****************************************************************</span></i></font></p></div><br class="Apple-interchange-newline"></span></span><br class="Apple-interchange-newline">
</div>
<br><div><div>On May 8, 2014, at 11:13 AM, Pavel Afonine <<a href="mailto:pafonine@lbl.gov">pafonine@lbl.gov</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
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Hi Parker,<br>
<br>
this requires loading map manually (not using auto-open, as Nat
pointed out):<br>
<br>
Start Coot -><br>
File -><br>
Open MTZ, mmCIF, fcf or phs -><br>
Choose file fem.mtz or whatever you called it, hit Open -><br>
In popped menu "Column Label Assignment" choose:<br>
Amplitudes: FEM<br>
Phases: PHIFEM<br>
-> hit OK<br>
<br>
Contouring at 1sigma is universally good. Going down to 0 should not
change the appearance much.<br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 5/8/14, 8:01 AM, de Waal, Parker
wrote:<br>
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<blockquote cite="mid:974700F6B71AA04897B9105CC7E1AAFA71D318@VAIEXMB01.vai.org" type="cite">
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<div class="WordSection1"><p class="MsoNormal">Hello Everyone,<o:p></o:p></p><p class="MsoNormal"><o:p> </o:p></p><p class="MsoNormal">I�m having trouble opening the map file
generated by phenix.fem in coot. Each time I try and load the
.mtz file the follow error occurs �Failed to find any suitable
F/phi columns in the MTZ file�.<o:p></o:p></p><p class="MsoNormal"><o:p> </o:p></p><p class="MsoNormal">Dumping the mtz file I can see:<o:p></o:p></p><p class="MsoNormal"><o:p> </o:p></p><p class="MsoNormal">Col Sort Min Max Num %
Mean Mean Resolution Type Column<o:p></o:p></p><p class="MsoNormal">num order Missing
complete abs. Low High label<o:p></o:p></p><p class="MsoNormal"><o:p> </o:p></p><p class="MsoNormal"> 1 NONE 0 33 0 100.00
12.1 12.1 114.15 3.31 H H<o:p></o:p></p><p class="MsoNormal"> 2 NONE 0 33 0 100.00
12.8 12.8 114.15 3.31 H K<o:p></o:p></p><p class="MsoNormal"> 3 NONE 0 137 0 100.00
51.4 51.4 114.15 3.31 H L<o:p></o:p></p><p class="MsoNormal"> 4 NONE 0.0 10551.1 22963 71.24
406.13 406.13 39.60 3.31 F 2mFoDFc<o:p></o:p></p><p class="MsoNormal"> 5 NONE -180.0 180.0 22963 71.24
0.98 89.81 39.60 3.31 P PHI2mFoDFc<o:p></o:p></p><p class="MsoNormal"> 6 NONE 5.2 51589.8 0 100.00
1602.72 1602.72 114.15 3.31 F FEM<o:p></o:p></p><p class="MsoNormal"> 7 NONE -180.0 180.0 0 100.00
0.32 89.74 114.15 3.31 P PHIFEM<o:p></o:p></p><p class="MsoNormal"><o:p> </o:p></p><p class="MsoNormal">If someone could help me to rename these
columns to a coot friendly format so that I would be greatly
appreciative.
<o:p></o:p></p><p class="MsoNormal"><o:p> </o:p></p><p class="MsoNormal">Best,<o:p></o:p></p><p class="MsoNormal">Parker<o:p></o:p></p>
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