<div dir="ltr">On Sat, Jun 7, 2014 at 10:24 PM, 李翔 <span dir="ltr"><<a href="mailto:lixiang1642@gmail.com" target="_blank">lixiang1642@gmail.com</a>></span> wrote:<br><div class="gmail_extra"><div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>I currently can only access to PHENIX with my laptop which has a Windows system (GUI). I want to run some commands for generating restraints for my models such as:</div>
<div><div>iotbx.show_distances MR.1.pdb > contacts.distances, phenix.secondary_structure_restraints model.pdb</div>
</div><div><br></div><div>Is there a way I can run commands in GUI version or can I run the above commands in the GUI version?</div></div></blockquote><div><br></div><div>Yes, I think you need to run a command like this:</div>
<div><br></div><div>C:\PHENIX-1.9-1692\Phenix-1.9-1692_build\setpaths.bat</div><div><br></div><div>which will add the path to all of the command-line executables. This is only partially supported, however - I can't guarantee that all of the commands will actually work on Windows.</div>
<div><br></div><div>-Nat</div></div></div></div>