<div dir="ltr">John<div><br></div><div>Here is the atom selection page</div><div><br></div><div><a href="http://www.phenix-online.org/documentation/reference/atom_selections.html">http://www.phenix-online.org/documentation/reference/atom_selections.html</a><br>
<div><br></div><div>and here is an example.</div><div><pre class="" style="margin-left:2em;margin-right:2em;color:rgb(0,0,0)">within(5, (nucleotide or peptide) backbone)</pre><pre class="" style="margin-left:2em;margin-right:2em;color:rgb(0,0,0)">
<br></pre></div></div><div class="gmail_extra">Contact me if you have any more trouble.</div><div class="gmail_extra"><br></div><div class="gmail_extra">Cheers</div><div class="gmail_extra"><br></div><div class="gmail_extra">
Nigel<br><br><div class="gmail_quote">On Fri, Jun 27, 2014 at 6:03 AM, Tanner, John J. <span dir="ltr"><<a href="mailto:TannerJJ@missouri.edu" target="_blank">TannerJJ@missouri.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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Is there a way to select a sphere of residues in the phenix.superpose_pdbs command, analogous to the "around" syntax in cns? I tried "within" and "around" in phenix.superpose_pdbs but got "Atom selection syntax error".
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<div>Thanks.</div>
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<div>Jack Tanner</div>
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John J. Tanner<br>
Professor of Biochemistry and Chemistry<br>
University of Missouri-Columbia<br>
125 Chemistry Building<br>
Columbia, MO 65211<br>
email: <a href="mailto:tannerjj@missouri.edu" target="_blank">tannerjj@missouri.edu</a><br>
phone: <a href="tel:573-884-1280" value="+15738841280" target="_blank">573-884-1280</a><br>
fax: <a href="tel:573-882-2754" value="+15738822754" target="_blank">573-882-2754</a><br>
<a href="http://faculty.missouri.edu/~tannerjj/tannergroup/tanner.html" target="_blank">http://faculty.missouri.edu/~tannerjj/tannergroup/tanner.html</a><br>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br>Nigel W. Moriarty<br>Building 64R0246B, Physical Biosciences Division<br>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709 Email : NWMoriarty@LBL.gov<br>
Fax : 510-486-5909 Web : <a href="http://CCI.LBL.gov">CCI.LBL.gov</a>
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