<div dir="ltr">On Fri, Jun 27, 2014 at 10:45 AM, Nigel Moriarty <span dir="ltr"><<a href="mailto:nwmoriarty@lbl.gov" target="_blank">nwmoriarty@lbl.gov</a>></span> wrote:<br><div class="gmail_extra"><div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Here is the atom selection page</div><div><br></div><div><a href="http://www.phenix-online.org/documentation/reference/atom_selections.html" target="_blank">http://www.phenix-online.org/documentation/reference/atom_selections.html</a><br>
<div><br></div><div>and here is an example.</div><div><pre style="margin-left:2em;margin-right:2em;color:rgb(0,0,0)">within(5, (nucleotide or peptide) backbone)</pre></div></div></div></blockquote><div><br></div><div>That won't work in phenix.superpose_pdbs (or the atom selection tool in the GUI) because the "within" syntax depends on the full geometry restraints setup (which is slower and therefore not used in these contexts). This has been annoying me for a while, so I will look into changing it.</div>
<div><br></div><div>-Nat</div></div></div></div>