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All right let me know if anything performs better than
phenix.real_space_refine and I will do my best to catch up -;)<br>
Pavel<br>
<br>
P.S.: phenix.real_space_refine is still under active development.<br>
<br>
<div class="moz-cite-prefix">On 7/28/14, 9:31 AM, George
Devaniranjan wrote:<br>
</div>
<blockquote
cite="mid:CAFU65PfWrweOTPnwCzdHAKoD2WA2VuH1VqTFhi+Dbj1cufyOSw@mail.gmail.com"
type="cite">
<div dir="ltr">Hi Pavel,
<div><br>
</div>
<div>Thank you, I have also tried COOT but I wanted to know
whether anyone had used (with success ) other similar tools.</div>
<div><br>
</div>
<div>Why? Mostly curiosity :) but also to do a comparison I
guess of performance.</div>
<div><br>
</div>
<div>Thank you, I will check some of the others you have
mentioned.</div>
<div><br>
</div>
<div>George</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Mon, Jul 28, 2014 at 9:29 AM, Pavel
Afonine <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:pafonine@lbl.gov" target="_blank">pafonine@lbl.gov</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000"> Hi George,<br>
<br>
as far as I know phenix.real_space_refine is the only
user-exposed real-space refinement utility in Phenix. You
can think of Tom's morphing as a kind of real-space
refinement (phenix.morph_model). Also, you can think of
mmtbx.lockit as a simplest version of
phenix.real_space_refine.<br>
<br>
Outside Phenix I would say Coot, Chimera, HermiteFit, ...
there are many more and Google is your friend to find
them.<br>
<br>
Just curious: why?<br>
<br>
Pavel
<div>
<div class="h5"><br>
<br>
<div>On 7/28/14, 9:19 AM, George Devaniranjan wrote:<br>
</div>
</div>
</div>
<blockquote type="cite">
<div>
<div class="h5">
<div dir="ltr">Hi,
<div><br>
</div>
<div>I know this is going to sound blasphemous in
phenix (my apology particularly to Pavel) but is
there other s/w that does similar things to <span
style="color:rgb(26,26,26);font-family:Arial;font-size:9pt">phenix.real_space_refine</span><span
style="color:rgb(26,26,26);font-family:Arial;font-size:9pt"> ?</span></div>
<div><span
style="color:rgb(26,26,26);font-family:Arial;font-size:9pt"><br>
</span></div>
<div><font color="#1a1a1a" face="Arial"><span
style="font-size:9pt">I used that already
(works very well) but was wondering if there
was anything similar out there to do a </span><span
style="font-size:12px">comparison</span><span
style="font-size:9pt">.</span></font></div>
<div><span
style="color:rgb(26,26,26);font-family:Arial;font-size:9pt"><br>
</span></div>
<div><span
style="color:rgb(26,26,26);font-family:Arial;font-size:9pt">Thank
you,</span></div>
<div><span
style="color:rgb(26,26,26);font-family:Arial;font-size:9pt">George</span></div>
</div>
<br>
<fieldset></fieldset>
<br>
</div>
</div>
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