<html><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"></head><body ><div>grep "^ATOM " filename.pdb | cut -c 61-66 | awk '{s+=$1;} END {print s/NR;}'</div><div><br></div><div>"Nobody likes a show off, Private"</div><div> Skipper</div><div><br></div><div>Cheers</div><div><br></div><div><br></div><div><div style="font-size:9px;color:#575757">Sent on a Sprint Samsung Galaxy S® III</div></div><br><br><div>-------- Original message --------</div><div>From: Chen Zhao <c.zhao@yale.edu> </div><div>Date:10/04/2014 4:03 PM (GMT-05:00) </div><div>To: PHENIX user mailing list <phenixbb@phenix-online.org> </div><div>Subject: [phenixbb] Calculate average B-factor? </div><div><br></div><div dir="ltr"><div><div><div>Dear all,<br><br></div>I am just wondering whether there is a command line tool in phenix that calculates the average B-factor of a PDB file? Can it deal with the ANISOU records (from TLS refinement or not) properly? I looked into previous posts but the --show-adp-statistics option in phenix.pdbtools seems to be no longer available in the version (1.9-1678) I installed.<br><br></div>Thank you so much,<br></div>Chen<br></div>
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