<div dir="ltr">Error messages like "ImportError: No module named site" usually indicate that a Python installation is seriously broken. The intent was to use the Python distributed with Phenix but it looks like Rosetta's build system makes additional Python calls that may use a different interpreter. What is the output of these commands?<div><br></div><div>which python</div><div>python -c "import socket"</div><div><br></div><div>-Nat<br><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Dec 18, 2014 at 4:36 AM, Felipe Trajtenberg <span dir="ltr"><<a href="mailto:felipet@pasteur.edu.uy" target="_blank">felipet@pasteur.edu.uy</a>></span> wrote:<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Dear all,<br>
<br>
I am trying to build the hybrid installation between Rosetta and Phenix using the rosetta.build_phenix_interface command<br>
<br>
Phenix version: phenix-1.9-1692<br>
Rosetta version: rosetta_2014.35.57232<br>
<br>
I have no problem in compiling rosetta alone but when I try to build the hybrid system I get the following error:<br>
<br>
False<br>
scons: Reading SConscript files ...<br>
Running versioning script ... Done. (0.0 seconds)<br>
Could not find platform independent libraries <prefix><br>
Could not find platform dependent libraries <exec_prefix><br>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]<br>
ImportError: No module named site<br>
CalledProcessError: Command '['./update_options.sh']' returned non-zero exit status 1:<br>
File "/home/Xtal/Rosetta_phenix/<u></u>rosetta_2014.35.57232_bundle/<u></u>main/source/SConstruct", line 172:<br>
main()<br>
File "/home/Xtal/Rosetta_phenix/<u></u>rosetta_2014.35.57232_bundle/<u></u>main/source/SConstruct", line 163:<br>
SConscript("SConscript", "build")<br>
File "/home/Xtal/Rosetta_phenix/<u></u>rosetta_2014.35.57232_bundle/<u></u>main/source/external/scons-<u></u>local/scons-local-2.0.1/SCons/<u></u>Script/SConscript.py", line 614:<br>
return method(*args, **kw)<br>
File "/home/Xtal/Rosetta_phenix/<u></u>rosetta_2014.35.57232_bundle/<u></u>main/source/external/scons-<u></u>local/scons-local-2.0.1/SCons/<u></u>Script/SConscript.py", line 551:<br>
return _SConscript(self.fs, *files, **subst_kw)<br>
File "/home/Xtal/Rosetta_phenix/<u></u>rosetta_2014.35.57232_bundle/<u></u>main/source/external/scons-<u></u>local/scons-local-2.0.1/SCons/<u></u>Script/SConscript.py", line 260:<br>
exec _file_ in call_stack[-1].globals<br>
File "/home/Xtal/Rosetta_phenix/<u></u>rosetta_2014.35.57232_bundle/<u></u>main/source/SConscript", line 28:<br>
subprocess.check_call(["./<u></u>update_options.sh"])<br>
File "/home/Xtal/Phenix/phenix-1.9-<u></u>1692/build/intel-linux-2.6-<u></u>x86_64/base/lib/python2.7/<u></u>subprocess.py", line 540:<br>
raise CalledProcessError(retcode, cmd)<br>
<br>
thanks in advance<br>
<br>
Felipe<br>
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</blockquote></div></div></div></div>