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<div class="moz-cite-prefix">Dear Nat<br>
<br>
Indeed the python is not the one distributed with Phenix!<br>
<br>
which python<br>
<br>
/usr/bin/python<br>
<br>
python -c "import socket"<br>
<br>
no output at all!<br>
<br>
I change the python and now is installed!<br>
<br>
thanks!<br>
<br>
felipe<br>
<br>
<br>
On 12/19/2014 04:25 PM, Nathaniel Echols wrote:<br>
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<blockquote
cite="mid:CALeAa1MODuD9dOd4KaCOBY0UCLeYo=rGo5EiXrGLxES-E+wDxw@mail.gmail.com"
type="cite">
<div dir="ltr">Error messages like "ImportError: No module named
site" usually indicate that a Python installation is seriously
broken. The intent was to use the Python distributed with
Phenix but it looks like Rosetta's build system makes additional
Python calls that may use a different interpreter. What is the
output of these commands?
<div><br>
</div>
<div>which python</div>
<div>python -c "import socket"</div>
<div><br>
</div>
<div>-Nat<br>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Thu, Dec 18, 2014 at 4:36 AM,
Felipe Trajtenberg <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:felipet@pasteur.edu.uy" target="_blank">felipet@pasteur.edu.uy</a>></span>
wrote:
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Dear
all,<br>
<br>
I am trying to build the hybrid installation between
Rosetta and Phenix using the
rosetta.build_phenix_interface command<br>
<br>
Phenix version: phenix-1.9-1692<br>
Rosetta version: rosetta_2014.35.57232<br>
<br>
I have no problem in compiling rosetta alone but when I
try to build the hybrid system I get the following
error:<br>
<br>
False<br>
scons: Reading SConscript files ...<br>
Running versioning script ... Done. (0.0 seconds)<br>
Could not find platform independent libraries
<prefix><br>
Could not find platform dependent libraries
<exec_prefix><br>
Consider setting $PYTHONHOME to
<prefix>[:<exec_prefix>]<br>
ImportError: No module named site<br>
CalledProcessError: Command '['./update_options.sh']'
returned non-zero exit status 1:<br>
File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/SConstruct",
line 172:<br>
main()<br>
File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/SConstruct",
line 163:<br>
SConscript("SConscript", "build")<br>
File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
line 614:<br>
return method(*args, **kw)<br>
File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
line 551:<br>
return _SConscript(self.fs, *files, **subst_kw)<br>
File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
line 260:<br>
exec _file_ in call_stack[-1].globals<br>
File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/SConscript",
line 28:<br>
subprocess.check_call(["./update_options.sh"])<br>
File "/home/Xtal/Phenix/phenix-1.9-1692/build/intel-linux-2.6-x86_64/base/lib/python2.7/subprocess.py",
line 540:<br>
raise CalledProcessError(retcode, cmd)<br>
<br>
thanks in advance<br>
<br>
Felipe<br>
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</blockquote>
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