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Hi,<br>
<br>
I just fixed this problem. Next available Phenix nightly build will
have it. <br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 1/14/15 10:21 AM, jp d wrote:<br>
</div>
<blockquote
cite="mid:1395950051.1170987.1421259718049.JavaMail.yahoo@jws10648.mail.bf1.yahoo.com"
type="cite">
<div style="color:#000; background-color:#fff;
font-family:HelveticaNeue-Light, Helvetica Neue Light, Helvetica
Neue, Helvetica, Arial, Lucida Grande,
sans-serif;font-size:16px">
<div dir="ltr" id="yui_3_16_0_1_1420742169275_776627">hi,</div>
<div id="yui_3_16_0_1_1420742169275_776709" dir="ltr">of course,
i should have included the version</div>
<div id="yui_3_16_0_1_1420742169275_776710" dir="ltr">phenix.version_1.9-1692<br>
</div>
<div id="yui_3_16_0_1_1420742169275_776715" dir="ltr"><br>
</div>
<div id="yui_3_16_0_1_1420742169275_776786" dir="ltr">the pdb
has done more digging and included this comment<br>
</div>
<div id="yui_3_16_0_1_1420742169275_776646"><br>
</div>
<div id="yui_3_16_0_1_1420742169275_776782">"Aside from the
asym_id, there is another way we use for the mapping, <br
style="" class="">
_<a moz-do-not-send="true"
id="yui_3_16_0_1_1420742169275_776645" style="" class=""
href="http://atom_site_anisotrop.id/" target="_blank">atom_site_anisotrop.id</a>
should map(for ANSIO) to _<a moz-do-not-send="true" style=""
class="" href="http://atom_site.id/" target="_blank">atom_site.id</a>(for
ATOM).<br style="" class="">
<br style="" class="">
This is one-by-one match for each atom. If you look at the
file, you see that in the ATOM section, you have<br style=""
class="">
ATOM 99999 N3 . U . 367 ? -23.56200 29.36600 106.68800 1.000
135.52000 N ? UC ? 11964 1<br style="" class="">
ATOM 100000 C4 . U . 367 ? -23.35700 30.62600 106.16100 1.000
133.22000 C ? UC ? 11964 1<br style="" class="">
<br style="" class="">
But in the ANISO section, you have<br style="" class="">
99999 N3 . U . 367 ? 2.04230 1.43260 1.67410 -0.19220 -0.28280
-0.16500<br style="" class="">
A0000 C4 . U . 367 ? 2.00150 1.41600 1.64420 -0.1 8730
-0.28010 -0.16450</div>
<div id="yui_3_16_0_1_1420742169275_776779" style="" class=""><br>
</div>
<div id="yui_3_16_0_1_1420742169275_776783" style="" class="">i.e.
the atom No. after 99999 is inconsistent between the two
sections. The ANISO should use 100000.<br>
</div>
<div id="yui_3_16_0_1_1420742169275_776785" style="" class="">"</div>
<div id="yui_3_16_0_1_1420742169275_776787" style="" class=""><br>
</div>
<div id="yui_3_16_0_1_1420742169275_776788" dir="ltr" style=""
class="">thanks</div>
<div id="yui_3_16_0_1_1420742169275_776807" dir="ltr" style=""
class="">jpd<br style="" class="">
</div>
</div>
<br>
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<br>
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</pre>
</blockquote>
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