<html>
<head>
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Hi Alex,<br>
<br>
Phenix GUI -> Model tools -> PDB Tools -> Options ->
click on Occupancies -> in popped up window type in atom
selection and choose one of three available actions (randomize...,
set..., reset...) -> hit OK -> hit Run.<br>
<br>
I think that should do it.<br>
<br>
In the command line:<br>
<br>
phenix.pdbtools model.pdb occupancies.set=0.46 selection="chain A
and resseq 1:2"<br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 4/13/15 6:46 AM, Alejandro Virrueta
wrote:<br>
</div>
<blockquote
cite="mid:CAA5EDMRfvs_piNnsWfKnLrxLq=Op9DeLF7AT4EUH3yhQ+fruJA@mail.gmail.com"
type="cite">
<div dir="ltr"><span style="font-size:12.8000001907349px">Hello,</span>
<div style="font-size:12.8000001907349px"><br>
</div>
<div style="font-size:12.8000001907349px">I was wondering if
someone could show me a way to set the occupancy of a specific
set of atoms to 0 using phenix.pdbtools.</div>
<div style="font-size:12.8000001907349px"><br>
</div>
<div style="font-size:12.8000001907349px">I noticed�<a
moz-do-not-send="true"
href="http://www.phenix-online.org/download/documentation/cci_apps/pdbtools.html#anch2">here</a>�that
there is no option under modify =>�occupancies to do an
'atom_selection'.�<span style="font-size:12.8000001907349px">Any
help would be appreciated.</span></div>
<div style="font-size:12.8000001907349px"><br>
</div>
<div style="font-size:12.8000001907349px">Cheers,</div>
<div style="font-size:12.8000001907349px">Alex<br>
</div>
</div>
</blockquote>
<br>
</body>
</html>