<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Dear Smith,<div class=""><br class=""></div><div class="">I suspect that you need to think a bit about whether the contour level you're using for the two maps is the same, in terms of electrons per cubic Angstrom.</div><div class=""><br class=""></div><div class="">Best wishes,</div><div class=""><br class=""></div><div class="">Randy Read</div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On 23 Apr 2015, at 07:41, Smith Liu <<a href="mailto:smith_liu123@163.COM" class="">smith_liu123@163.COM</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div style="line-height: 1.7; font-size: 14px; font-family: Arial;" class=""><div class="">Dear All,</div><div class=""> </div><div class="">I have tried to cut out the density by the Phenix graphical interface with the cutout type as model, but I find in the cut out map, there is more density arond the residues than in the input mtz map, here I mean, take a Lys residue as an example, in the input map, from Calpha there is about 1/2 of the sidechain was surrounded by the density, but in the cutting out map, there is about 2/3 of the sidechain was surrounded by the density.</div><div class=""> </div><div class="">Will you please tell me if I want to get the cutting out density in the model cutout type, how can I have the cutting out density looks exactly or very close to the input density in the input mtz?</div><div class=""> </div><div class="">Smith</div></div><br class=""><br class=""><span title="neteasefooter" class=""><span id="netease_mail_footer" class=""></span></span>_______________________________________________<br class="">phenixbb mailing list<br class=""><a href="mailto:phenixbb@phenix-online.org" class="">phenixbb@phenix-online.org</a><br class="">http://phenix-online.org/mailman/listinfo/phenixbb<br class="">Unsubscribe: phenixbb-leave@phenix-online.org</div></blockquote></div><br class=""><div apple-content-edited="true" class="">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div class="">------</div><div class="">Randy J. Read</div><div class="">Department of Haematology, University of Cambridge</div><div class="">Cambridge Institute for Medical Research Tel: + 44 1223 336500</div><div class="">Wellcome Trust/MRC Building Fax: + 44 1223 336827</div><div class="">Hills Road E-mail: <a href="mailto:rjr27@cam.ac.uk" class="">rjr27@cam.ac.uk</a></div><div class="">Cambridge CB2 0XY, U.K. <a href="http://www-structmed.cimr.cam.ac.uk" class="">www-structmed.cimr.cam.ac.uk</a></div></span></span>
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