<div dir="ltr">Hi, <div><br></div><div>The GUI version is available under "Model tools" and called "Geometry minimization".</div><div><br></div><div>Best regards,<br>Oleg Sobolev.</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Apr 27, 2015 at 12:57 PM, Kgosisejo, Oarabile <span dir="ltr"><<a href="mailto:o.kgosisejo@usask.ca" target="_blank">o.kgosisejo@usask.ca</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
Is there only the command line version of this or the GUI usage is available as well?<br>
<br>
Best Regards,<br>
<br>
Oarabile Kgosisejo<br>
________________________________________<br>
From: <a href="mailto:phenixbb-bounces@phenix-online.org">phenixbb-bounces@phenix-online.org</a> [<a href="mailto:phenixbb-bounces@phenix-online.org">phenixbb-bounces@phenix-online.org</a>] on behalf of Pavel Afonine [<a href="mailto:pafonine@lbl.gov">pafonine@lbl.gov</a>]<br>
Sent: January 20, 2015 1:58 PM<br>
To: PC; PHENIX list<br>
Subject: Re: [phenixbb] idealizing structure<br>
<div><div class="h5"><br>
> Is there a way to "idealize" a structure in Phenix?<br>
><br>
> I mean, ideal omega, all residues within allowed regions of Ramachandran maps, no clashes..etc. I know it won't fit the map well but I would like to see what it looks like.<br>
<br>
Yes, using phenix.geometry_minimization :<br>
<br>
<a href="http://phenix-online.org/documentation/reference/geometry_minimization.html" target="_blank">http://phenix-online.org/documentation/reference/geometry_minimization.html</a><br>
<br>
Pavel<br>
<br>
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