<html>
<head>
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Hi Smith,<br>
<br>
"local_grid_search" should do it if there is reasonable density. I'm
still optimizing it for cases of no density.<br>
<br>
<a class="moz-txt-link-freetext" href="https://www.phenix-online.org/presentations/real_space_refine.pdf">https://www.phenix-online.org/presentations/real_space_refine.pdf</a><br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 4/28/15 8:51 PM, Smith Liu wrote:<br>
</div>
<blockquote
cite="mid:218d3727.6564.14d034c95e0.Coremail.smith_liu123@163.com"
type="cite">
<div
style="line-height:1.7;color:#000000;font-size:14px;font-family:Arial">
<div>Dear All,</div>
<div>�</div>
<div>If with phenix.real_space_refine, I got a model (with PDB),
in which there is a fragment containing several residues (not
in continuation in the fragment), with side chains not fitting
to�the corresponding side chain density (or out of the
density, but close to the density), which function(s) of
phenix.real_space_refine (for example,minimization_global or
local_grid_search?) can improve the fitting of the
sidechains�to the density?</div>
<div>�</div>
<div>I am looking forward to getting your reply.</div>
<div>�</div>
<div>Smith�</div>
</div>
<br>
<br>
<span title="neteasefooter"><span id="netease_mail_footer"></span></span><br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
phenixbb mailing list
<a class="moz-txt-link-abbreviated" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>
<a class="moz-txt-link-freetext" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a>
Unsubscribe: <a class="moz-txt-link-abbreviated" href="mailto:phenixbb-leave@phenix-online.org">phenixbb-leave@phenix-online.org</a></pre>
</blockquote>
<br>
</body>
</html>