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I suspect this is a ribosome structure.. It would be great to make
this work indeed, so if it still does not work please send us inputs
so we can investigate.<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 5/28/15 10:34 PM, Oleg Sobolev
wrote:<br>
</div>
<blockquote
cite="mid:CADd3otFVyFahk-vgJ0Y-wi4R1jzN4qG7njXy9xpCd1qxLgA=9w@mail.gmail.com"
type="cite">
<div dir="ltr">Hi,
<div><br>
</div>
<div>If removing of TER indices won't work in dev-2056, I will
be happy to investigate and find a way to make it work for
everybody. To do so I will need the inputs you are using (i.e.
models and parameter files)</div>
<div><br>
</div>
<div>Best regards,</div>
<div>Oleg Sobolev.</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Thu, May 28, 2015 at 2:10 PM, Nigel
Moriarty <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:nwmoriarty@lbl.gov" target="_blank">nwmoriarty@lbl.gov</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">The error says it doesn't like the TER cards.
Remove them all and retry.</div>
<div class="gmail_extra"><br clear="all">
<div>
<div>
<div dir="ltr">Cheers
<div><br>
</div>
<div>Nigel
<div><br>
</div>
<div>---</div>
<div>Nigel W. Moriarty<br>
Building 64R0246B, Physical Biosciences Division<br>
Lawrence Berkeley National Laboratory<br>
Berkeley, CA 94720-8235<br>
Phone : <a moz-do-not-send="true"
href="tel:510-486-5709" value="+15104865709"
target="_blank">510-486-5709</a>� �� Email :
<a class="moz-txt-link-abbreviated" href="mailto:NWMoriarty@LBL.gov">NWMoriarty@LBL.gov</a><br>
Fax�� : <a moz-do-not-send="true"
href="tel:510-486-5909" value="+15104865909"
target="_blank">510-486-5909</a>� � �� Web� :
<a moz-do-not-send="true"
href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div>
</div>
</div>
</div>
</div>
<br>
<div class="gmail_quote">
<div>
<div class="h5">On Thu, May 28, 2015 at 1:29 PM, jp d
<span dir="ltr"><<a moz-do-not-send="true"
href="mailto:yoyoq@yahoo.com" target="_blank">yoyoq@yahoo.com</a>></span>
wrote:<br>
</div>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div class="h5">
<div>
<div
style="color:#000;background-color:#fff;font-family:HelveticaNeue-Light,Helvetica
Neue Light,Helvetica
Neue,Helvetica,Arial,Lucida
Grande,sans-serif;font-size:16px">
<div>
<div>
<div
style="color:#000;background-color:#fff;font-family:HelveticaNeue-Light,Helvetica
Neue Light,Helvetica
Neue,Helvetica,Arial,Lucida
Grande,sans-serif;font-size:16px">
<div>Hi,</div>
<div>I am having trouble getting phenix
to used segid's in reference model
restraints when<br>
</div>
<div dir="ltr">my reference and target
pdbs both don't use chain ID's.</div>
<div dir="ltr">phenix quits with this
message:</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">*** Adding Reference
Model Restraints ***<br>
Sorry: chain ' ' in
/home/path/removed/agnref2.pdb
contains one or more errant TER cards.<br>
Please remove and try again.<br>
<br>
</div>
<div dir="ltr">my definition file looks
like this:</div>
<div dir="ltr">refinement {<br>
�� main {<br>
���� reference_model_restraints = True<br>
�� }<br>
�� reference_model {<br>
���� file = two.pdb<br>
�� }<br>
}<br>
�<br>
refinement.reference_model.reference_group
{<br>
�reference = segid A16S<br>
�selection = segid A16S<br>
}<br>
</div>
<div dir="ltr">
<div dir="ltr">(above about 50 more
times)</div>
<div><br>
</div>
</div>
<div dir="ltr">this was on versions
1.9-1692 , dev-2016 and dev-2056<br>
</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">
<div>any suggestions ?</div>
<div>thanks</div>
<div>jpd<br>
</div>
<div><br>
</div>
</div>
<div dir="ltr"><br>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
</div>
</div>
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