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    I suspect this is a ribosome structure.. It would be great to make
    this work indeed, so if it still does not work please send us inputs
    so we can investigate.<br>
    Pavel<br>
    <br>
    <div class="moz-cite-prefix">On 5/28/15 10:34 PM, Oleg Sobolev
      wrote:<br>
    </div>
    <blockquote
cite="mid:CADd3otFVyFahk-vgJ0Y-wi4R1jzN4qG7njXy9xpCd1qxLgA=9w@mail.gmail.com"
      type="cite">
      <div dir="ltr">Hi,
        <div><br>
        </div>
        <div>If removing of TER indices won't work in dev-2056, I will
          be happy to investigate and find a way to make it work for
          everybody. To do so I will need the inputs you are using (i.e.
          models and parameter files)</div>
        <div><br>
        </div>
        <div>Best regards,</div>
        <div>Oleg Sobolev.</div>
      </div>
      <div class="gmail_extra"><br>
        <div class="gmail_quote">On Thu, May 28, 2015 at 2:10 PM, Nigel
          Moriarty <span dir="ltr">&lt;<a moz-do-not-send="true"
              href="mailto:nwmoriarty@lbl.gov" target="_blank">nwmoriarty@lbl.gov</a>&gt;</span>
          wrote:<br>
          <blockquote class="gmail_quote" style="margin:0 0 0
            .8ex;border-left:1px #ccc solid;padding-left:1ex">
            <div dir="ltr">The error says it doesn't like the TER cards.
              Remove them all and retry.</div>
            <div class="gmail_extra"><br clear="all">
              <div>
                <div>
                  <div dir="ltr">Cheers
                    <div><br>
                    </div>
                    <div>Nigel
                      <div><br>
                      </div>
                      <div>---</div>
                      <div>Nigel W. Moriarty<br>
                        Building 64R0246B, Physical Biosciences Division<br>
                        Lawrence Berkeley National Laboratory<br>
                        Berkeley, CA 94720-8235<br>
                        Phone : <a moz-do-not-send="true"
                          href="tel:510-486-5709" value="+15104865709"
                          target="_blank">510-486-5709</a>� �� Email :
                        <a class="moz-txt-link-abbreviated" href="mailto:NWMoriarty@LBL.gov">NWMoriarty@LBL.gov</a><br>
                        Fax�� : <a moz-do-not-send="true"
                          href="tel:510-486-5909" value="+15104865909"
                          target="_blank">510-486-5909</a>� � �� Web� :
                        <a moz-do-not-send="true"
                          href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div>
                    </div>
                  </div>
                </div>
              </div>
              <br>
              <div class="gmail_quote">
                <div>
                  <div class="h5">On Thu, May 28, 2015 at 1:29 PM, jp d
                    <span dir="ltr">&lt;<a moz-do-not-send="true"
                        href="mailto:yoyoq@yahoo.com" target="_blank">yoyoq@yahoo.com</a>&gt;</span>
                    wrote:<br>
                  </div>
                </div>
                <blockquote class="gmail_quote" style="margin:0 0 0
                  .8ex;border-left:1px #ccc solid;padding-left:1ex">
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                    <div class="h5">
                      <div>
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                          style="color:#000;background-color:#fff;font-family:HelveticaNeue-Light,Helvetica
                          Neue Light,Helvetica
                          Neue,Helvetica,Arial,Lucida
                          Grande,sans-serif;font-size:16px">
                          <div>
                            <div>
                              <div
                                style="color:#000;background-color:#fff;font-family:HelveticaNeue-Light,Helvetica
                                Neue Light,Helvetica
                                Neue,Helvetica,Arial,Lucida
                                Grande,sans-serif;font-size:16px">
                                <div>Hi,</div>
                                <div>I am having trouble getting phenix
                                  to used segid's in reference model
                                  restraints when<br>
                                </div>
                                <div dir="ltr">my reference and target
                                  pdbs both don't use chain ID's.</div>
                                <div dir="ltr">phenix quits with this
                                  message:</div>
                                <div dir="ltr"><br>
                                </div>
                                <div dir="ltr">*** Adding Reference
                                  Model Restraints ***<br>
                                  Sorry: chain ' ' in
                                  /home/path/removed/agnref2.pdb
                                  contains one or more errant TER cards.<br>
                                  Please remove and try again.<br>
                                  <br>
                                </div>
                                <div dir="ltr">my definition file looks
                                  like this:</div>
                                <div dir="ltr">refinement {<br>
                                  �� main {<br>
                                  ���� reference_model_restraints = True<br>
                                  �� }<br>
                                  �� reference_model {<br>
                                  ���� file = two.pdb<br>
                                  �� }<br>
                                  }<br>
                                  �<br>
                                  refinement.reference_model.reference_group
                                  {<br>
                                  �reference = segid A16S<br>
                                  �selection = segid A16S<br>
                                  }<br>
                                </div>
                                <div dir="ltr">
                                  <div dir="ltr">(above about 50 more
                                    times)</div>
                                  <div><br>
                                  </div>
                                </div>
                                <div dir="ltr">this was on versions
                                  1.9-1692 , dev-2016 and dev-2056<br>
                                </div>
                                <div dir="ltr"><br>
                                </div>
                                <div dir="ltr">
                                  <div>any suggestions ?</div>
                                  <div>thanks</div>
                                  <div>jpd<br>
                                  </div>
                                  <div><br>
                                  </div>
                                </div>
                                <div dir="ltr"><br>
                                </div>
                              </div>
                            </div>
                          </div>
                        </div>
                      </div>
                      <br>
                    </div>
                  </div>
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