<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue-Light, Helvetica Neue Light, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yiv9355518650"><div id="yui_3_16_0_1_1432137981352_1135952"><div id="yui_3_16_0_1_1432137981352_1135951" style="color:#000;background-color:#fff;font-family:HelveticaNeue-Light, Helvetica Neue Light, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px;"><div id="yiv9355518650yui_3_16_0_1_1432137981352_1127831">Hi,</div><div id="yiv9355518650yui_3_16_0_1_1432137981352_1127872">I am having trouble getting phenix to used segid's in reference model restraints when<br></div><div dir="ltr" id="yiv9355518650yui_3_16_0_1_1432137981352_1127869">my reference and target pdbs both don't use chain ID's.</div><div id="yiv9355518650yui_3_16_0_1_1432137981352_1127886" dir="ltr">phenix quits with this message:</div><div id="yiv9355518650yui_3_16_0_1_1432137981352_1127905" dir="ltr"><br></div><div id="yiv9355518650yui_3_16_0_1_1432137981352_1127922" dir="ltr">*** Adding Reference Model Restraints ***<br style="" class="yiv9355518650">Sorry: chain ' ' in /home/path/removed/agnref2.pdb contains one or more errant TER cards.<br style="" class="yiv9355518650">Please remove and try again.<br style="" class="yiv9355518650"><br></div><div style="" class="yiv9355518650" id="yiv9355518650yui_3_16_0_1_1432137981352_1127905" dir="ltr">my definition file looks like this:</div><div id="yiv9355518650yui_3_16_0_1_1432137981352_1127967" style="" class="yiv9355518650" dir="ltr">refinement {<br style="" class="yiv9355518650"> main {<br style="" class="yiv9355518650"> reference_model_restraints = True<br style="" class="yiv9355518650"> }<br style="" class="yiv9355518650"> reference_model {<br style="" class="yiv9355518650"> file = two.pdb<br style="" class="yiv9355518650"> }<br style="" class="yiv9355518650">}<br style="" class="yiv9355518650"> <br style="" class="yiv9355518650">refinement.reference_model.reference_group {<br style="" class="yiv9355518650"> reference = segid A16S<br style="" class="yiv9355518650"> selection = segid A16S<br style="" class="yiv9355518650">}<br style="" class="yiv9355518650"></div><div id="yiv9355518650yui_3_16_0_1_1432137981352_1127985" style="" class="yiv9355518650" dir="ltr"><div dir="ltr" id="yui_3_16_0_1_1432137981352_1135959">(above about 50 more times)</div><div id="yui_3_16_0_1_1432137981352_1136019"><br></div></div><div id="yiv9355518650yui_3_16_0_1_1432137981352_1128066" style="" class="yiv9355518650" dir="ltr">this was on versions 1.9-1692 , dev-2016 and dev-2056<br></div><div id="yui_3_16_0_1_1432137981352_1135953" style="" class="yiv9355518650" dir="ltr"><br></div><div id="yui_3_16_0_1_1432137981352_1136020" style="" class="yiv9355518650" dir="ltr"><div id="yui_3_16_0_1_1432137981352_1136022">any suggestions ?</div><div id="yui_3_16_0_1_1432137981352_1136024">thanks</div><div id="yui_3_16_0_1_1432137981352_1136025">jpd<br></div><div><br></div></div><div style="" class="yiv9355518650" dir="ltr"><br> </div></div></div></div></div></body></html>