<div dir="ltr">Hi,<div><br></div><div>If removing of TER indices won't work in dev-2056, I will be happy to investigate and find a way to make it work for everybody. To do so I will need the inputs you are using (i.e. models and parameter files)</div><div><br></div><div>Best regards,</div><div>Oleg Sobolev.</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, May 28, 2015 at 2:10 PM, Nigel Moriarty <span dir="ltr"><<a href="mailto:nwmoriarty@lbl.gov" target="_blank">nwmoriarty@lbl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">The error says it doesn't like the TER cards. Remove them all and retry.</div><div class="gmail_extra"><br clear="all"><div><div><div dir="ltr">Cheers<div><br></div><div>Nigel<div><br></div><div>---</div><div>Nigel W. Moriarty<br>Building 64R0246B, Physical Biosciences Division<br>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : <a href="tel:510-486-5709" value="+15104865709" target="_blank">510-486-5709</a> Email : NWMoriarty@LBL.gov<br>Fax : <a href="tel:510-486-5909" value="+15104865909" target="_blank">510-486-5909</a> Web : <a href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div></div></div></div></div>
<br><div class="gmail_quote"><div><div class="h5">On Thu, May 28, 2015 at 1:29 PM, jp d <span dir="ltr"><<a href="mailto:yoyoq@yahoo.com" target="_blank">yoyoq@yahoo.com</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"><div><div style="color:#000;background-color:#fff;font-family:HelveticaNeue-Light,Helvetica Neue Light,Helvetica Neue,Helvetica,Arial,Lucida Grande,sans-serif;font-size:16px"><div><div><div style="color:#000;background-color:#fff;font-family:HelveticaNeue-Light,Helvetica Neue Light,Helvetica Neue,Helvetica,Arial,Lucida Grande,sans-serif;font-size:16px"><div>Hi,</div><div>I am having trouble getting phenix to used segid's in reference model restraints when<br></div><div dir="ltr">my reference and target pdbs both don't use chain ID's.</div><div dir="ltr">phenix quits with this message:</div><div dir="ltr"><br></div><div dir="ltr">*** Adding Reference Model Restraints ***<br>Sorry: chain ' ' in /home/path/removed/agnref2.pdb contains one or more errant TER cards.<br>Please remove and try again.<br><br></div><div dir="ltr">my definition file looks like this:</div><div dir="ltr">refinement {<br> main {<br> reference_model_restraints = True<br> }<br> reference_model {<br> file = two.pdb<br> }<br>}<br> <br>refinement.reference_model.reference_group {<br> reference = segid A16S<br> selection = segid A16S<br>}<br></div><div dir="ltr"><div dir="ltr">(above about 50 more times)</div><div><br></div></div><div dir="ltr">this was on versions 1.9-1692 , dev-2016 and dev-2056<br></div><div dir="ltr"><br></div><div dir="ltr"><div>any suggestions ?</div><div>thanks</div><div>jpd<br></div><div><br></div></div><div dir="ltr"><br> </div></div></div></div></div></div><br></div></div>_______________________________________________<br>
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