<div dir="ltr">Etienne<div><br></div><div>On OSX with a more recent version of phenix (dev-2057 should be fine) and exactly the same Rosetta version, I have not trouble running on the command line or in the GUI. Perhaps you could send me your files to be sure it's not an input error.</div><div><br></div><div>NB. Any files sent to me will be held in strictest confidence.<br><br></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr">Cheers<div><br></div><div>Nigel<div><br></div><div>---</div><div>Nigel W. Moriarty<br>Building 64R0246B, Physical Biosciences Division<br>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709 Email : NWMoriarty@LBL.gov<br>Fax : 510-486-5909 Web : <a href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div></div></div></div></div>
<br><div class="gmail_quote">On Wed, Jun 3, 2015 at 12:08 AM, Rebuffet Etienne <span dir="ltr"><<a href="mailto:etienne.rebuffet@inserm.fr" target="_blank">etienne.rebuffet@inserm.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear all,<br>
<br>
I get the same error message as Thomas and I would appreciate any help about this issue. I am currently running :<br>
Phenix: 1.6-1692<br>
Rosetta: 2015.19.57819<br>
<br>
Thanks,<br>
<br>
Etienne<div class="HOEnZb"><div class="h5"><br>
<br>
<br>
Le 28/05/2015 20:59, Klose, Thomas a écrit :<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Dear all,<br>
<br>
I was trying to set up phenix.rosetta_refine to test it for the refinement of a 4.5Å structure. I installed the latest phenix release and compiled the latest rosetta version (2015.19) using rosetta.build_phenix_interface. However, when I try to run phenix.rosetta_refine I get the following error message:<br>
<br>
….<br>
Generating 5 models on 4 processors...<br>
<br>
DEBUG dumping error message<br>
ERROR: Rosetta exited with status 1<br>
stderr output:<br>
Sorry:<br>
<br>
Wrong map type requested: %%map_type%%<br>
Allowed format is: [p][m]Fo+[q][D]Fc[kick][filled]<br>
where [p] and [q] are any numbers (optional),<br>
[m] and [D] indicate if the requested map is sigmaa (optional),<br>
Fo and Fc are Fobs and Fcalc,<br>
[kick] is for Average Kick Map (optional),<br>
[filled] is for missing Fobs filled map.<br>
Examples: 2mFo-DFc, 3.2Fo-2.3Fc, mFobs-DFcalc_kick, 2mFobs-DFcalc_filled, Fc,<br>
2mFobs-DFcalc_kick_fill, anom, anom_diff, anomalous_difference, Fo<br>
<br>
<br>
ERROR: PhenixInterface::calculateDensityMap() : error writing map<br>
ERROR:: Exit from: src/core/scoring/cryst/PhenixInterface.cc line: 1122<br>
<br>
This happens with our actual data as well as test data that I downloaded (PDB: 1yip).<br>
<br>
Any help in solving this problem would be greatly appreciated.<br>
<br>
Thanks,<br>
Thomas<br>
<br>
<br>
<br>
<br>
_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a><br>
<br>
</blockquote>
<br>
_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a></div></div></blockquote></div><br></div>