<div dir="ltr">Jens<div><br></div><div>Have you followed the instructions?</div><div><br></div><div><a href="http://www.phenix-online.org/documentation/reference/rosetta_refine.html">http://www.phenix-online.org/documentation/reference/rosetta_refine.html</a><br></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr">Cheers<div><br></div><div>Nigel<div><br></div><div>---</div><div>Nigel W. Moriarty<br>Building 64R0246B, Physical Biosciences Division<br>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709 Email : NWMoriarty@LBL.gov<br>Fax : 510-486-5909 Web : <a href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div></div></div></div></div>
<br><div class="gmail_quote">On Sat, Jun 27, 2015 at 2:38 AM, Jens Kaiser <span dir="ltr"><<a href="mailto:kaiser@caltech.edu" target="_blank">kaiser@caltech.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hey there,<br>
who would be the person to talk about setting up<br>
phenix.rosetta_refine? I tried our SBgrid installation with overrides to<br>
"nightly" for phenix and rosetta; I tried a clean install of rosetta and<br>
phenix - production version and nightly's in all combinations - and all<br>
combinations of compiling (rosetta first, then<br>
rosetta.build_phenix_interface, phenix first, then<br>
rosetta.build_phenix_interface). The problem is that<br>
"phenix.rosetta_refine" seems to run, and produce a log file that looks<br>
reasonable, but geometry params are worse than with an ordinary refine.<br>
I think I tracked it down to the fact that the "rosetta_XX.sh" files are<br>
empty, and rosetta actually does not run.<br>
<br>
Any help is welcome - and any support will be extended.<br>
<br>
Cheers,<br>
<br>
Jens<br>
<br>
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