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Hi Almudena,<br>
<br>
what these values are? Could you please send me (off mailing list)
model and data files after refinement for which you got this
message?<br>
<br>
Thanks,<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 7/14/15 04:56, Almudena Ponce
Salvatierra wrote:<br>
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<div>Dear all, <br>
<br>
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after refinement of my nucleic acid structure with
phenix.refine I get: "warning: rms deviation from
ideal geometry (bonds and/or angles) is
suspisciously high. You may need to optimize X-ray
stereochemistry weighting"<br>
<br>
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However when I move to the molprobity tab I see no
outliers no anything... looking weird. <br>
<br>
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I even more wonder where this comes from because the
fact is that I had one refinement with no warnings or
anything and today I repeated the same, exactly the
same, except for the fact that I renumbered one of the
chains. Now all out of a sudden (I know it doesn't sound
scientific at all), I get this warning regarding the
rmsd when I was actually considering that the refinement
stage was over. <br>
<br>
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Does anybody have a theory regarding where the problem
might be here? <br>
<br>
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Thanks a lot in advance. <br>
<br>
</div>
Best wishes, <br>
<br>
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Almudena<br clear="all">
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-- <br>
<div class="gmail_signature">
<div dir="ltr">Almudena Ponce-Salvatierra
<div>Macromolecular crystallography and
Nucleic acid chemistry</div>
<div>Max Planck Institute for Biophysical
Chemistry</div>
<div>Am Fassberg 11 37077 G�ttingen</div>
<div>Germany</div>
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