<html>
<head>
<meta content="text/html; charset=UTF-8" http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#FFFFFF">
Hi Jianghai,<br>
<br>
it is available in cctbx and it is used as part of FEM, phenix.fem
[*], and phenix.map_comparison [**] but there is no standalone
user-accessible program that would take your map and turn it into
rank-scaled one.<br>
<br>
It is trivial to add so I'm adding it right now and chances are you
will have it in tomorrow's nightly build.<br>
<br>
All the best,<br>
Pavel<br>
<br>
[*]<br>
Acta Cryst. (2015). D71, 646-666.<br>
FEM: feature-enhanced map<br>
P. V. Afonine, N. W. Moriarty, M. Mustyakimov, O. V. Sobolev, T. C.
Terwilliger, D. Turk, A. Urzhumtsev and P. D. Adams<br>
<br>
[**]<br>
Acta Cryst. (2014). D70, 2593-2606.<br>
Metrics for comparison of crystallographic maps<br>
A. Urzhumtsev, P. V. Afonine, V. Y. Lunin, T. C. Terwilliger and P.
D. Adams<br>
<br>
<br>
<br>
<div class="moz-cite-prefix">On 8/21/15 10:41, Jianghai Zhu wrote:<br>
</div>
<blockquote cite="mid:1440178906104.6b60500b@Nodemailer" type="cite">
<div id="mbx-wrapper">
<div id="mbx-content" class="content"
onfocus="didBecomeFirstResponder()" onblur="didBlur()"
contenteditable="true">Hi,
<div><br>
</div>
<div>I know PHENIX can calculate a rank-scaled density map.
Could anyone inform me which program in PHENIX actually
does this? </div>
<div><br>
</div>
<div>Thanks.</div>
</div>
<div id="mbx-old-email" contenteditable="true">
<div class="mailbox_signature" style="display: block;">
<br>
Best,</div>
<span class="mailbox-inline-edit"></span>
<span class="mailbox-inline-edit">--Jianghai </span></div>
</div>
</blockquote>
<br>
</body>
</html>