<html>
<head>
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Hi,<br>
<br>
could you please send me the PDB file so I can reproduce what you
experience?<br>
<br>
Thanks,<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 10/3/15 09:40, Victor Xiao wrote:<br>
</div>
<blockquote
cite="mid:CAPw6niMA5Tj8N0pB+C2Vyhb+QAnn01UWdTu+fSQ-rKX2f1iGpg@mail.gmail.com"
type="cite">
<div dir="ltr">Hi All,
<div><br>
</div>
<div>I just have tried to run phenix.refine after designating
the NCS groups, and it actually worked as I expected. So only
is the display not correct (all chains are shown in every NCS
groups) when I re-open '<span style="font-size:14px">'Detect
NCS Groups'. Maybe it is a bug?</span></div>
<div><span style="font-size:14px"><br>
</span></div>
<div><span style="font-size:14px">Xiao</span></div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">2015-10-02 22:23 GMT-07:00 Victor Xiao
<span dir="ltr"><<a moz-do-not-send="true"
href="mailto:victor41187@gmail.com" target="_blank">victor41187@gmail.com</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Dear all,
<div><br>
</div>
<div>I have a protein-DNA structure that has six molecules
in ASU. All six molecules share the same sequence and
very similar structure. However, only three of them bind
to DNA and conformations are slightly different from the
other three. By default, PHENIX will consider six
molecules into the same NCS group. Now I am trying to
set up two NCS group, e.g. chain A,B,C are in one group
(no-DNA), chain D, E, F are in another group
(DNA-bound).</div>
<div><br>
</div>
<div>So I did the following steps:</div>
<div><br>
</div>
<div>1. I used PHENIX GUI and go to 'Utilities' ->
'Detect NCS Groups'.�</div>
<div>2. Put chain A, B, C in 'Torsion NCS restraint group
1'.�</div>
<div>3. 'Add group' and put chain D, E, F in 'Torsion NCS
restraint group 2'.�</div>
<div>4. Click 'Update and exit'.�</div>
<div><br>
</div>
<div>However, after that, when I re-open �'Utilities'
-> 'Detect NCS Groups', I found all six chains A-F
are in group 1, and all six chains A-F in group 2.�</div>
<div><br>
</div>
<div>Did I do something incorrectly? Or any other
suggestion for my purpose?</div>
<div><br>
</div>
<div>Thank you!</div>
<div><br>
</div>
<div>Best,</div>
<div>Xiao</div>
</div>
</blockquote>
</div>
<br>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
phenixbb mailing list
<a class="moz-txt-link-abbreviated" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>
<a class="moz-txt-link-freetext" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a>
Unsubscribe: <a class="moz-txt-link-abbreviated" href="mailto:phenixbb-leave@phenix-online.org">phenixbb-leave@phenix-online.org</a></pre>
</blockquote>
<br>
</body>
</html>