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<p class="MsoNormal">Dear Phenix users,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Can you, please, clarify, how can I get local B factor for the residues around the ligand.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><![if !supportLists]><span style="mso-list:Ignore">1)<span style="font:7.0pt "Times New Roman"">
</span></span><![endif]>I saw this reply in an archive: <a href="http://www.phenix-online.org/pipermail/phenixbb/2011-March/016819.html">
http://www.phenix-online.org/pipermail/phenixbb/2011-March/016819.html</a><o:p></o:p></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><![if !supportLists]><span style="mso-list:Ignore">2)<span style="font:7.0pt "Times New Roman"">
</span></span><![endif]>But it doesn’t suit me, because, for instance in this case:
<a href="http://www.rcsb.org/pdb/explore/explore.do?structureId=4RUP">http://www.rcsb.org/pdb/explore/explore.do?structureId=4RUP</a> the interacting residues are:
<a href="http://www.rcsb.org/pdb/images/H97:4RUP_psv_v_500.png">http://www.rcsb.org/pdb/images/H97:4RUP_psv_v_500.png</a> 302, 265, 175, 423 can be fitted into a sequence, but I don’t need everything in between them<o:p></o:p></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><![if !supportLists]><span style="mso-list:Ignore">3)<span style="font:7.0pt "Times New Roman"">
</span></span><![endif]>There is also another option: <a href="http://www.ebi.ac.uk/thornton-srv/databases/PDBsum/ru/4rup/grow.out">
http://www.ebi.ac.uk/thornton-srv/databases/PDBsum/ru/4rup/grow.out</a> I can extract interactions from here and make a request to Phenix. If so, can I request the b-factor just for one exact amino acid?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thank you in advance,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Anastasia<o:p></o:p></p>
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