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Anastasia,<br>
<br>
another way of doing it (that avoid manual editing of the file):<br>
<br>
phenix.pdb_atom_selection model.pdb "chain A and resseq 1:3"
--write-pdb-file=selected.pdb<br>
<br>
then<br>
<br>
phenix.pdbtools selected.pdb model_stat=true <br>
<br>
should do it.<br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 10/13/15 07:44, Karchevskaya,
Anastasia wrote:<br>
</div>
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<p class="MsoNormal">Dear Phenix users,<o:p></o:p></p>
<p class="MsoNormal"><o:p>�</o:p></p>
<p class="MsoNormal">Can you, please, clarify, how can I get
local B factor for the residues around the ligand.<o:p></o:p></p>
<p class="MsoNormal"><o:p>�</o:p></p>
<p class="MsoListParagraph"
style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><!--[if !supportLists]--><span
style="mso-list:Ignore">1)<span style="font:7.0pt
"Times New Roman"">�����
</span></span><!--[endif]-->I saw this reply in an archive:
<a moz-do-not-send="true"
href="http://www.phenix-online.org/pipermail/phenixbb/2011-March/016819.html">http://www.phenix-online.org/pipermail/phenixbb/2011-March/016819.html</a><o:p></o:p></p>
<p class="MsoListParagraph"
style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><!--[if !supportLists]--><span
style="mso-list:Ignore">2)<span style="font:7.0pt
"Times New Roman"">�����
</span></span><!--[endif]-->But it doesn�t suit me, because,
for instance in this case:
<a moz-do-not-send="true"
href="http://www.rcsb.org/pdb/explore/explore.do?structureId=4RUP">http://www.rcsb.org/pdb/explore/explore.do?structureId=4RUP</a>
the interacting residues are:
<a moz-do-not-send="true"
href="http://www.rcsb.org/pdb/images/H97:4RUP_psv_v_500.png">http://www.rcsb.org/pdb/images/H97:4RUP_psv_v_500.png</a>
302, 265, 175, 423 can be fitted into a sequence, but I don�t
need everything in between them<o:p></o:p></p>
<p class="MsoListParagraph"
style="text-indent:-18.0pt;mso-list:l0 level1 lfo1"><!--[if !supportLists]--><span
style="mso-list:Ignore">3)<span style="font:7.0pt
"Times New Roman"">�����
</span></span><!--[endif]-->There is also another option: <a
moz-do-not-send="true"
href="http://www.ebi.ac.uk/thornton-srv/databases/PDBsum/ru/4rup/grow.out"><a class="moz-txt-link-freetext" href="http://www.ebi.ac.uk/thornton-srv/databases/PDBsum/ru/4rup/grow.out">http://www.ebi.ac.uk/thornton-srv/databases/PDBsum/ru/4rup/grow.out</a></a>
I can extract interactions from here and make a request to
Phenix. If so, can I request the b-factor just for one exact
amino acid?<o:p></o:p></p>
<p class="MsoNormal"><o:p>�</o:p></p>
<p class="MsoNormal">Thank you in advance,<o:p></o:p></p>
<p class="MsoNormal"><o:p>�</o:p></p>
<p class="MsoNormal">Anastasia<o:p></o:p></p>
</div>
<br>
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<br>
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