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Oh good, one problem less!<br>
Pavel<br>
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<div class="moz-cite-prefix">On 10/29/15 03:55, Smith Liu wrote:<br>
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<div>Dear All,<br>
<br>
<br>
I have it solved. The initial PDB was transformed from a VMD
fdvd file. Its Ile contained a CD atom. Once changing CD to
CD1, the error message disappears.<br>
<br>
Smith<br>
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At 2015-10-29 15:24:12, "Smith Lee"
<a class="moz-txt-link-rfc2396E" href="mailto:smith_lee123@yahoo.com"><smith_lee123@yahoo.com></a> wrote:<br>
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<div id="yui_3_16_0_1_1446103033766_2530">Dear All,</div>
<div id="yui_3_16_0_1_1446103033766_2662"><br>
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<div id="yui_3_16_0_1_1446103033766_2661">When I run
phenix.real_space_refine, in the rotamer restraints step I
meet the following error message:</div>
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<div id="yui_3_16_0_1_1446103033766_2749">RuntimeError:
rotatable bond atoms CG1-CD (as defined by tardy-tree): no
match in rotamer-info.tor_ids <br>
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<div id="yui_3_16_0_1_1446103033766_2750"><br>
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<div>Will you please let me know how to overcome this error?</div>
<div id="yui_3_16_0_1_1446103033766_2751"><br>
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<div id="yui_3_16_0_1_1446103033766_2752" dir="ltr">Best
regards.</div>
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<div id="yui_3_16_0_1_1446103033766_2753" dir="ltr"><br>
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<div id="yui_3_16_0_1_1446103033766_2748" dir="ltr">Smith<br>
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<p>�</p>
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