<html>
  <head>
    <meta content="text/html; charset=windows-1252"
      http-equiv="Content-Type">
  </head>
  <body bgcolor="#FFFFFF" text="#000000">
    Oh good, one problem less!<br>
    Pavel<br>
    <br>
    <div class="moz-cite-prefix">On 10/29/15 03:55, Smith Liu wrote:<br>
    </div>
    <blockquote
      cite="mid:1c9d4f03.b162.150b33ca11b.Coremail.smith_liu123@163.com"
      type="cite">
      <div
        style="line-height:1.7;color:#000000;font-size:14px;font-family:Arial">
        <div>Dear All,<br>
          <br>
          <br>
          I have it solved. The initial PDB was transformed from a VMD
          fdvd file. Its Ile contained a CD atom. Once changing CD to
          CD1, the error message disappears.<br>
          <br>
          Smith<br>
        </div>
        <br>
        <br>
        <br>
        <br>
        <br>
        At 2015-10-29 15:24:12, "Smith Lee"
        <a class="moz-txt-link-rfc2396E" href="mailto:smith_lee123@yahoo.com">&lt;smith_lee123@yahoo.com&gt;</a> wrote:<br>
        <blockquote id="isReplyContent" style="PADDING-LEFT: 1ex;
          MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">
          <div style="color:#000; background-color:#fff;
            font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial,
            Lucida Grande, sans-serif;font-size:16px">
            <div id="yui_3_16_0_1_1446103033766_2530">Dear All,</div>
            <div id="yui_3_16_0_1_1446103033766_2662"><br>
            </div>
            <div id="yui_3_16_0_1_1446103033766_2661">When I run
              phenix.real_space_refine, in the rotamer restraints step I
              meet the following error message:</div>
            <div><br>
            </div>
            <div id="yui_3_16_0_1_1446103033766_2749">RuntimeError:
              rotatable bond atoms CG1-CD (as defined by tardy-tree): no
              match in rotamer-info.tor_ids <br>
            </div>
            <div id="yui_3_16_0_1_1446103033766_2750"><br>
            </div>
            <div>Will you please let me know how to overcome this error?</div>
            <div id="yui_3_16_0_1_1446103033766_2751"><br>
            </div>
            <div id="yui_3_16_0_1_1446103033766_2752" dir="ltr">Best
              regards.</div>
            <div dir="ltr"><br>
            </div>
            <div id="yui_3_16_0_1_1446103033766_2753" dir="ltr"><br>
            </div>
            <div id="yui_3_16_0_1_1446103033766_2748" dir="ltr">Smith<br>
            </div>
          </div>
        </blockquote>
      </div>
      <br>
      <br>
      <span title="neteasefooter">
        <p>�</p>
      </span><br>
      <fieldset class="mimeAttachmentHeader"></fieldset>
      <br>
      <pre wrap="">_______________________________________________
phenixbb mailing list
<a class="moz-txt-link-abbreviated" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>
<a class="moz-txt-link-freetext" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a>
Unsubscribe: <a class="moz-txt-link-abbreviated" href="mailto:phenixbb-leave@phenix-online.org">phenixbb-leave@phenix-online.org</a></pre>
    </blockquote>
    <br>
  </body>
</html>