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    Hi Caleb,<br>
    <br>
    thanks for update and good news!<br>
    <br>
    Pavel<br>
    <br>
    <div class="moz-cite-prefix">On 11/5/15 00:47, Caleb Geniesse wrote:<br>
    </div>
    <blockquote
cite="mid:CAMWscxQZ_yKJ2RqaT8q=xjuq1tXGeNx+5gTfme5S5iWft72+NA@mail.gmail.com"
      type="cite">Hi Pavel,
      <div><br>
      </div>
      <div>Thanks for bringing this up.</div>
      <div><br>
      </div>
      <div>I believe the issue was resolved last spring (though, not
        publicized very well). So yes, Phenix-Erraser should work inside
        current Phenix if a relatively recent release of Rosetta is
        installed on the same machine.</div>
      <div><br>
      </div>
      <div>(source: I'm that student!)</div>
      <div><br>
      </div>
      <div>Cheers,</div>
      <div>Caleb<br>
        <br>
        On Thursday, November 5, 2015, Pavel Afonine &lt;<a
          moz-do-not-send="true" href="mailto:pafonine@lbl.gov"><a class="moz-txt-link-abbreviated" href="mailto:pafonine@lbl.gov">pafonine@lbl.gov</a></a>&gt;
        wrote:<br>
        <blockquote class="gmail_quote" style="margin:0 0 0
          .8ex;border-left:1px #ccc solid;padding-left:1ex">
          <div bgcolor="#FFFFFF" text="#000000"> Caleb,<br>
            <br>
            thanks for updates!<br>
            <br>
            Could you please confirm that Phenix-Erraser works in
            current Phenix:<br>
            <br>
            <a moz-do-not-send="true"
              href="https://www.phenix-online.org/download/nightly_builds.cgi"
              target="_blank">https://www.phenix-online.org/download/nightly_builds.cgi</a><br>
            <br>
            ?<br>
            <br>
            My recollection is that Phenix-Erraser stopped working
            starting at some point a while back, quoting Fang-Chieh Chou
            (1/21/15):<br>
            <br>
            """<br>
            (...)<br>
            <div>Erraser is currently imcompatible with the latest
              phenix release, due to changes in Phenix API. Tom and I
              have some discussions on how to fix it, but I was too busy
              to fix Erraser as I am working on other projects toward
              graduation.</div>
            <div><br>
            </div>
            <div>For now you may use erraser with an earlier phenix
              version. We have a new student and he will be in charge of
              fixing and maintaining erraser in the future. He is still
              wrapping up another project so we may start fixing it in
              one or two months later.</div>
            (...)<br>
            """ <br>
            <br>
            Thanks,<br>
            Pavel<br>
            <br>
            <div>On 11/4/15 09:10, Caleb Geniesse wrote:<br>
            </div>
            <blockquote type="cite">
              <div dir="ltr">
                <div>Hi all,<br>
                  <br>
                  My name is Caleb and I am a research programmer in the
                  Das lab who has taken over the maintenance of ERRASER.
                  <br>
                  <br>
                  ERRASER (Enumerative Real-space Refinment ASsisted by
                  Electron-density under Rosetta) is an application for
                  improving RNA crystal structures based on Rosetta and
                  Phenix.<br>
                  <br>
                  While benchmarking the current state of ERRASER, I
                  uncovered some discrepancies in the clash scores and
                  outliers of the resulting models (compared to the
                  original benchmark in Chou FC et al., 2012).
                  Accordingly, I've made some updates to the ERRASER
                  code within Rosetta addressing these issues.<br>
                  <br>
                  <b>To avoid possible inaccuracies introduced by these
                    bugs,</b> <b><i>all PHENIX-ERRASER users should
                      download/install a weekly build of Rosetta 2015.35
                      (released Sept. 24, 2015) or later</i>.</b><br>
                  <br>
                  For more extensive PHENIX-ERRASER documentation and
                  installation notes, please see: <a
                    moz-do-not-send="true"
href="https://www.phenix-online.org/documentation/reference/erraser.html"
                    target="_blank"><a class="moz-txt-link-freetext" href="https://www.phenix-online.org/documentation/reference/erraser.html">https://www.phenix-online.org/documentation/reference/erraser.html</a></a>.<br>
                </div>
                <div><br>
                  Please let me know if you have any questions!<br>
                  <br>
                </div>
                All the best, <br>
                <div>Caleb Geniesse<br>
                </div>
              </div>
              <br>
              <fieldset></fieldset>
              <br>
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      <br>
      <br>
      -- <br>
      <div dir="ltr"><span style="color:rgb(68,68,68)"><span
            style="background-color:rgb(255,255,255)">Caleb W. Geniesse<br>
            <br>
            E-mail: <a moz-do-not-send="true"
              href="mailto:calebgeniesse@gmail.com" target="_blank">calebgeniesse@gmail.com</a><br>
          </span></span><span style="color:rgb(68,68,68)"><span
            style="background-color:rgb(255,255,255)">Phone: +1 (630)
            335 0285</span></span></div>
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