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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">I am trying to run rosetta for a heterodimer with two different chains. I have the following commands, but in some subprocesses, I get the error message: Sorry: Sorry, need 2 fragment
files (3 and 9 residues) for rosetta_rebuild<br>
<br>
I have the following in my script:<br>
<br>
fragment_files_chain_list=V \<br>
fragment_files_chain_list=A \<br>
fragment_files_3_mer_by_chain="orfx3_03_05.200_v1_3" \<br>
fragment_files_9_mer_by_chain="orfx3_09_05.200_v1_3" \<br>
fragment_files_3_mer_by_chain="orfx1_03_05.200_v1_3" \<br>
fragment_files_9_mer_by_chain="orfx1_09_05.200_v1_3" \<br>
<br>
Do I need to have the chain ID in the filename?<br>
<br>
Kay<br>
<div><br>
<div style="font-family:Tahoma; font-size:13px"><font face="Helvetica" size="2"><span style="font-size:10pt">Kay Perry<br>
NE-CAT<br>
9700 S. Cass Ave.<br>
Bldg. 436 E007<br>
Argonne, IL 60439<br>
630-252-0692</span></font></div>
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