<div style="line-height:1.7;color:#000000;font-size:14px;font-family:Arial"><div>Dear Tom,<br>I have the same question too. <br>Another simple question is that how can I merge two symmetry related molecule? Though I can easily expand them by coot.<br><br>Best!<br>Lu<br></div><br><br><div style="position:relative;zoom:1">--<br><br><div style="color: rgb(51, 51, 51); font-family: 'Microsoft Yahei', verdana; font-size: 12px; line-height: 19.992000579834px;"><br></div><div style="color: rgb(51, 51, 51); font-family: 'Microsoft Yahei', verdana; font-size: 12px; line-height: 19.992000579834px;">Lu Zuokun, Ph.D. Candidate</div><div style="color: rgb(51, 51, 51); font-family: 'Microsoft Yahei', verdana; font-size: 12px; line-height: 19.992000579834px;">College of Life Science, Nankai University</div><div style="clear:both"></div></div><div id="divNeteaseMailCard"></div><br>�� 2015-11-18 23:14:48��"Terwilliger, Thomas Charles" <terwilliger@lanl.gov> ���<br> <blockquote id="isReplyContent" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">
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<p>Hi Ashok,<br>
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<p>If you have a PDB file with 2 crystallographically-related copies of your molecule, with one called chain A and one called chain B, you can run phenix.simple_ncs_from_pdb on your PDB file to find the matrices and translations. Let me know if that doesn't
do it!<br>
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<p>All the best,<br>
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<p>Tom T<br>
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<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b> <a href="mailto:phenixbb-bounces@phenix-online.org">phenixbb-bounces@phenix-online.org</a> <<a href="mailto:phenixbb-bounces@phenix-online.org">phenixbb-bounces@phenix-online.org</a>> on behalf of Ashok Nayak <<a href="mailto:ashokgocrackin@gmail.com">ashokgocrackin@gmail.com</a>><br>
<b>Sent:</b> Wednesday, November 18, 2015 7:58 AM<br>
<b>To:</b> <a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
<b>Subject:</b> [phenixbb] (no subject)</font>
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<div>Hello Phenix BB,<br>
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Like every amateur crystallographer I could easily generate symmetry mates in a given radius in coot, but I wondered always which is the crystallographic two fold axis axis(my space group being C2) through which the molecule is rotated and translated (if it
is) to get the next molecule. I tried superpose to find the answer, but could only get the Euler angles and transformation matrix and not the axis. Are there any programs where I can get to know this, would be grateful to be enlightened for the same<br>
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thanks BB in advance<br>
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<div>regards<br clear="all">
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<div dir="ltr"><font face="courier new, monospace"><font size="2">Ashok<u> </u></font>Nayak<br>
PhD student- <br>
Molecular and Structural Biology Division <br>
CSIR-CDRI, Janakipuram Extension<br>
Lucknow-226031<br>
India</font></div>
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