<div dir="ltr">Hi Dave,<div><br></div><div>It looks like there is a missing dependency for the CentOS6 build. Do other programs work in X? And what version are you running? The _XGetRequest symbol is from xorg-x11. We build on CentOS 6.5, so it probably needs the version from RedHat 6.5. You can try updating just the xorg-x11 rpms or updating to RedHat 6.5. If you can't do that, you may need to compile from source. Let us know if you have issues. Thanks!</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Tue, Feb 2, 2016 at 3:13 AM, David Briggs <span dir="ltr"><<a href="mailto:drdavidcbriggs@gmail.com" target="_blank">drdavidcbriggs@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div>Hi Phenix, <br><br></div>We are trying to upgrade Phenix on our Linux box running RHEL 6.3,<br> kernel 2.6.32-279.14.1.el6.x86_64.<br><br></div>I have attempted to install the Centos 5 build and I get an error message during installation:<br><br>Configuring Phenix components... Traceback (most recent call last): File "./bin/install.py", line 262, in <module> installer(sys.argv[1:]).install() File "/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py", line 185, in install self.install_from_binary() File "/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py", line 295, in install_from_binary self.reconfigure(log=log) File "/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py", line 460, in reconfigure call(args=args, log=log, verbose=self.options.verbose) File "/home/public/packages/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/installer_utils.py", line 81, in call raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc)) RuntimeError: Call to '/home/public/packages/phenix-1.10.1-2155/base/bin/python /home/public/packages/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py --current_working_directory /home/public/packages/phenix-1.10.1-2155/build --command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit' failed with exit code -11 <br><br></div><div>When I attempt install the CentOS6 build I can install Phenix, but when I try and launch it I get a different error message:<br><br>Traceback (most recent call last):
File "/home/public/packages/phenix-1.10.1-2155/build/../modules/phenix/wxGUI2/command_line/main.py", line 23, in <module>
run(sys.argv[1:])
File "/home/public/packages/phenix-1.10.1-2155/build/../modules/phenix/wxGUI2/command_line/main.py", line 16, in run
from wxGUI2 import App
File "/home/public/packages/phenix-1.10.1-2155/modules/phenix/wxGUI2/App.py", line 15, in <module>
import wx
File "/home/public/packages/phenix-1.10.1-2155/base/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/__init__.py", line 45, in <module>
from wx._core import *
File "/home/public/packages/phenix-1.10.1-2155/base/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", line 4, in <module>
import _core_
ImportError: /home/public/packages/phenix-1.10.1-2155/base/bin/../lib/libXrender.so.1: undefined symbol: _XGetRequest
<br><br></div><div><br></div><div>Should I give up and attempt to compile from the source, or is there a fix for these issues?<br><br></div><div>Kind regards, <br><br></div><div>Dave<span class="HOEnZb"><font color="#888888"><br></font></span></div></div><span class="HOEnZb"><font color="#888888"><div dir="ltr">-- <br></div><p dir="ltr">--</p>
<p dir="ltr">David Briggs<br>
<a href="http://about.me/david_briggs" target="_blank">about.me/david_briggs</a></p>
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