<div dir="ltr">Hi Min,<div><br></div><div>Can you run install again, but add the --verbose flag, and send the output log? Also, can you tell me which linux distribution and version you are running. Thanks!</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Thu, Feb 11, 2016 at 1:07 AM, Min Zheng <span dir="ltr">&lt;<a href="mailto:m_zhen01@uni-muenster.de" target="_blank">m_zhen01@uni-muenster.de</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear All,<br>
<br>
I am installing phenix, and get the following error:<br>
<br>
    ==========================================================================<br>
                          Phenix Installation<br>
<br>
                          version: 1.10.1-2155<br>
                     machine type: intel-linux-2.6-x86_64<br>
                       OS version: 3.11.10-29-default<br>
                      destination: /home/m/m_zhen01/phenix-1.10.1-2155<br>
                  # of processors: 20<br>
    =========================================================================<br>
<br>
Configuring Phenix components...<br>
<br>
<br>
Traceback (most recent call last):<br>
  File &quot;./bin/install.py&quot;, line 262, in &lt;module&gt;<br>
    installer(sys.argv[1:]).install()<br>
  File<br>
  &quot;/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py&quot;,<br>
  line 185, in install<br>
    self.install_from_binary()<br>
  File<br>
  &quot;/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py&quot;,<br>
  line 295, in install_from_binary<br>
    self.reconfigure(log=log)<br>
  File<br>
  &quot;/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py&quot;,<br>
  line 460, in reconfigure<br>
    call(args=args, log=log, verbose=self.options.verbose)<br>
  File<br>
  &quot;/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/installer_utils.py&quot;,<br>
  line 81, in call<br>
    raise RuntimeError(&quot;Call to &#39;%s&#39; failed with exit code %d&quot; % (args, rc))<br>
RuntimeError: Call to &#39;/home/m/m_zhen01/phenix-1.10.1-2155/base/bin/python<br>
/home/m/m_zhen01/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py<br>
--current_working_directory /home/m/m_zhen01/phenix-1.10.1-2155/build<br>
--command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit&#39;<br>
failed with exit code 1<br>
<br>
m_zhen01@LIBRA:~/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5&gt;<br>
/home/m/m_zhen01/phenix-1.10.1-2155/base/bin/python<br>
Traceback (most recent call last):<br>
  File &quot;/usr/lib64/python2.7/site.py&quot;, line 564, in &lt;module&gt;<br>
    main()<br>
  File &quot;/usr/lib64/python2.7/site.py&quot;, line 546, in main<br>
    known_paths = addusersitepackages(known_paths)<br>
  File &quot;/usr/lib64/python2.7/site.py&quot;, line 276, in addusersitepackages<br>
    user_site = getusersitepackages(kind)<br>
  File &quot;/usr/lib64/python2.7/site.py&quot;, line 244, in getusersitepackages<br>
    user_base = getuserbase() # this will also set USER_BASE<br>
  File &quot;/usr/lib64/python2.7/site.py&quot;, line 230, in getuserbase<br>
    from sysconfig import get_config_var<br>
  File &quot;/usr/lib64/python2.7/sysconfig.py&quot;, line 10, in &lt;module&gt;<br>
    &#39;stdlib&#39;: &#39;{base}/&#39;+sys.lib+&#39;/python{py_version_short}&#39;,<br>
AttributeError: &#39;module&#39; object has no attribute &#39;lib&#39;<br>
<br>
<br>
Thanks in advance,<br>
Min<br>
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</blockquote></div><br></div>