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<DIV style="FONT-SIZE: 12pt; FONT-FAMILY: 'Calibri'; COLOR: #000000">
<DIV>You need to enable the “alpha test programs” options. Open the Phenix
Preferences dialog, click the “General” button and scroll down to find it. Then
close and restart Phenix.</DIV>
<DIV> </DIV>
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<DIV style="FONT: 10pt tahoma">
<DIV><B>From:</B> <A title=gkontopidis@vet.uth.gr
href="mailto:gkontopidis@vet.uth.gr">George Kontopidis</A> </DIV>
<DIV style="BACKGROUND: #f5f5f5">
<DIV><B>Sent:</B> Sunday, February 14, 2016 11:45</DIV>
<DIV><B>To:</B> <A title=bkpoon@lbl.gov href="mailto:bkpoon@lbl.gov">'Billy
Poon'</A> ; <A title=rdo20@cam.ac.uk href="mailto:rdo20@cam.ac.uk">'R. D.
Oeffner'</A> </DIV>
<DIV><B>Cc:</B> <A title=phenixbb@phenix-online.org
href="mailto:phenixbb@phenix-online.org">'PHENIX user mailing list'</A> </DIV>
<DIV><B>Subject:</B> RE: [phenixbb] ensemble refinement</DIV></DIV></DIV>
<DIV> </DIV></DIV>
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<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'>Hi
Bill,<o:p></o:p></SPAN></P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'><o:p></o:p></SPAN> </P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'>Phenix
version dev-2313-000 (nightly builds) have been downloaded and
installed.<o:p></o:p></SPAN></P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'>GUI
(phenix.refine) refinement settings does not seem to have an ensemble refinement
option.<o:p></o:p></SPAN></P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'><o:p></o:p></SPAN> </P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'>Regards,
<o:p></o:p></SPAN></P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'><o:p></o:p></SPAN> </P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'>George<o:p></o:p></SPAN></P>
<P class=MsoNormal><SPAN lang=EN-US
style='FONT-SIZE: 11pt; FONT-FAMILY: "Calibri","sans-serif"; COLOR: #1f497d'><o:p></o:p></SPAN> </P>
<P class=MsoNormal><B><SPAN
style='FONT-SIZE: 10pt; FONT-FAMILY: "Tahoma","sans-serif"'>From:</SPAN></B><SPAN
style='FONT-SIZE: 10pt; FONT-FAMILY: "Tahoma","sans-serif"'> Billy Poon
[mailto:bkpoon@lbl.gov] <BR><B>Sent:</B> Saturday, February 13, 2016 10:46
PM<BR><B>To:</B> R. D. Oeffner<BR><B>Cc:</B> George Kontopidis; PHENIX user
mailing list<BR><B>Subject:</B> Re: [phenixbb] ensemble
refinement<o:p></o:p></SPAN></P>
<P class=MsoNormal><o:p></o:p> </P>
<DIV>
<P class=MsoNormal>Hi George,<o:p></o:p></P>
<DIV>
<P class=MsoNormal><o:p></o:p> </P></DIV>
<DIV>
<P class=MsoNormal>You should use one of the newer nightly builds if you want to
use the GUI since there have been updates to the GUI.
<o:p></o:p></P></DIV></DIV>
<DIV>
<P class=MsoNormal><BR clear=all><o:p></o:p></P>
<DIV>
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<P class=MsoNormal>--<o:p></o:p></P></DIV>
<DIV>
<P class=MsoNormal><SPAN style="FONT-SIZE: 9.5pt">Billy K.
Poon</SPAN><o:p></o:p></P></DIV></DIV>
<DIV>
<P class=MsoNormal>Research Scientist, Molecular Biophysics and Integrated
Bioimaging<o:p></o:p></P></DIV>
<DIV>
<P class=MsoNormal>Lawrence Berkeley National Laboratory<o:p></o:p></P></DIV>
<DIV>
<P class=MsoNormal>1 Cyclotron Road, M/S 33R0345<o:p></o:p></P></DIV>
<DIV>
<P class=MsoNormal>Berkeley, CA 94720<o:p></o:p></P></DIV>
<DIV>
<P class=MsoNormal>Tel: (510) 486-5709<o:p></o:p></P></DIV>
<DIV>
<P class=MsoNormal>Fax: (510) 486-5909<o:p></o:p></P></DIV>
<DIV>
<P class=MsoNormal>Web: <A href="https://phenix-online.org"
target=_blank>https://phenix-online.org</A><o:p></o:p></P></DIV></DIV></DIV></DIV></DIV></DIV></DIV></DIV></DIV></DIV></DIV></DIV></DIV></DIV>
<P class=MsoNormal><o:p></o:p> </P>
<DIV>
<P class=MsoNormal>On Sat, Feb 13, 2016 at 10:51 AM, R. D. Oeffner <<A
href="mailto:rdo20@cam.ac.uk" target=_blank>rdo20@cam.ac.uk</A>>
wrote:<o:p></o:p></P>
<P class=MsoNormal>It’s included as an alpha version in version 1.10.1-2155 so
you’ll have to switch on that setting to make it available from the GUI. It also
runs from the command line when you call phenix.ensemble_refinement.bat from the
phenix command prompt.<BR><BR>Do let us know about any issues as I don't think
many people have used it in anger on Windows
yet.<BR><BR>Regards,<BR><BR>Robert<BR><BR>-- <BR>Robert Oeffner,
Ph.D.<BR>Research Associate, The Read Group<BR>Department of
Haematology,<BR>Cambridge Institute for Medical Research<BR>University of
Cambridge<BR>Cambridge Biomedical Campus<BR>Wellcome Trust/MRC Building<BR>Hills
Road<BR>Cambridge CB2 0XY<BR><BR><A
href="http://www.cimr.cam.ac.uk/investigators/read/index.html"
target=_blank>www.cimr.cam.ac.uk/investigators/read/index.html</A><BR>tel: <A
href="tel:%2B44%280%291223%20763234" target=_blank>+44(0)1223
763234</A><BR><BR><BR>From: George Kontopidis<BR>Sent: Saturday, February 13,
2016 18:29<BR>To: <A href="mailto:phenixbb@phenix-online.org"
target=_blank>phenixbb@phenix-online.org</A><BR>Subject: [phenixbb] ensemble
refinement<o:p></o:p></P>
<DIV>
<DIV>
<P class=MsoNormal style="MARGIN-BOTTOM: 12pt"><BR><BR><BR>Does ensemble
refinement run on Phenix version 1.10.1-2155 (for windows)<BR><BR>If
yes<BR><BR>can it run from GUI or only using command
line?<BR><BR><BR><BR>George<BR><BR><BR><BR><BR><BR><BR><BR><BR><o:p></o:p></P></DIV></DIV>
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