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</o:shapelayout></xml><![endif]--></head><body lang=EL link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Hi Bill,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Phenix version dev-2313-000 (nightly builds) have been downloaded and installed.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>GUI (phenix.refine) refinement settings does not seem to have an ensemble refinement option.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Regards, <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>George<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Billy Poon [mailto:bkpoon@lbl.gov] <br><b>Sent:</b> Saturday, February 13, 2016 10:46 PM<br><b>To:</b> R. D. Oeffner<br><b>Cc:</b> George Kontopidis; PHENIX user mailing list<br><b>Subject:</b> Re: [phenixbb] ensemble refinement<o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p><div><p class=MsoNormal>Hi George,<o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>You should use one of the newer nightly builds if you want to use the GUI since there have been updates to the GUI. <o:p></o:p></p></div></div><div><p class=MsoNormal><br clear=all><o:p></o:p></p><div><div><div><div><div><div><div><div><div><div><div><div><div><div><div><p class=MsoNormal>--<o:p></o:p></p></div><div><p class=MsoNormal><span style='font-size:9.5pt'>Billy K. Poon</span><o:p></o:p></p></div></div><div><p class=MsoNormal>Research Scientist, Molecular Biophysics and Integrated Bioimaging<o:p></o:p></p></div><div><p class=MsoNormal>Lawrence Berkeley National Laboratory<o:p></o:p></p></div><div><p class=MsoNormal>1 Cyclotron Road, M/S 33R0345<o:p></o:p></p></div><div><p class=MsoNormal>Berkeley, CA 94720<o:p></o:p></p></div><div><p class=MsoNormal>Tel: (510) 486-5709<o:p></o:p></p></div><div><p class=MsoNormal>Fax: (510) 486-5909<o:p></o:p></p></div><div><p class=MsoNormal>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a><o:p></o:p></p></div></div></div></div></div></div></div></div></div></div></div></div></div></div><p class=MsoNormal><o:p> </o:p></p><div><p class=MsoNormal>On Sat, Feb 13, 2016 at 10:51 AM, R. D. Oeffner <<a href="mailto:rdo20@cam.ac.uk" target="_blank">rdo20@cam.ac.uk</a>> wrote:<o:p></o:p></p><p class=MsoNormal>It’s included as an alpha version in version 1.10.1-2155 so you’ll have to switch on that setting to make it available from the GUI. It also runs from the command line when you call phenix.ensemble_refinement.bat from the phenix command prompt.<br><br>Do let us know about any issues as I don't think many people have used it in anger on Windows yet.<br><br>Regards,<br><br>Robert<br><br>-- <br>Robert Oeffner, Ph.D.<br>Research Associate, The Read Group<br>Department of Haematology,<br>Cambridge Institute for Medical Research<br>University of Cambridge<br>Cambridge Biomedical Campus<br>Wellcome Trust/MRC Building<br>Hills Road<br>Cambridge CB2 0XY<br><br><a href="http://www.cimr.cam.ac.uk/investigators/read/index.html" target="_blank">www.cimr.cam.ac.uk/investigators/read/index.html</a><br>tel: <a href="tel:%2B44%280%291223%20763234" target="_blank">+44(0)1223 763234</a><br><br><br>From: George Kontopidis<br>Sent: Saturday, February 13, 2016 18:29<br>To: <a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>Subject: [phenixbb] ensemble refinement<o:p></o:p></p><div><div><p class=MsoNormal style='margin-bottom:12.0pt'><br><br><br>Does ensemble refinement run on Phenix version 1.10.1-2155 (for windows)<br><br>If yes<br><br>can it run from GUI or only using command line?<br><br><br><br>George<br><br><br><br><br><br><br><br><br><o:p></o:p></p></div></div><p class=MsoNormal>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br><a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a> <br>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br><a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a><o:p></o:p></p></div><p class=MsoNormal><o:p> </o:p></p></div></div></body></html>