<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><br class=""></div><div class="">Hi Nigel,</div><div class="">xcode version is now 2343.</div><div class="">rosetta.run_tests does not seem to be a command available:</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><font face="Courier New" class=""><b class="">Seba@host028</b>:~&gt; xcode-select --version<br class="">xcode-select version 2343.<br class=""><b class="">Seba@host028</b>:~&gt; rosetta.&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;<br class="">rosetta.build_phenix_interface &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;rosetta.relax_simple&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;<br class="">rosetta.build_phenix_interface_1.10-2155 &nbsp;rosetta.relax_simple_1.10-2155&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;<br class=""><b class="">Seba@host028</b>:~&gt; rosetta.</font><span style="font-family: 'Courier New';" class="">run_tests</span></div><div class=""><div class=""><font face="Courier New" class="">bash: rosetta.run_tests: command not found</font></div><div class=""><font face="Courier New" class=""><b class="">Seba@host028</b>:~&gt;&nbsp;</font></div></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">As mentioned I have just used the command:</div><div class=""><br class=""></div><div class="">rosetta.build_phenix_interface nproc=X</div><div class=""><br class=""></div><div class="">which seemed to build everything it had too without errors.</div><div class=""><br class=""></div><div class="">Rosetta_refine seems now to be running fine:</div><div class=""><br class=""></div><div class=""><div class=""><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">======================= ROSETTA/PHENIX X-ray refinement =======================</font></div><div style="margin: 0px; line-height: normal; min-height: 13px;" class=""><font face="Courier New" class=""><br class=""></font></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">Output directory:</font></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">&nbsp; /GoogleDrive/Crystallography_Unit_cloud/NuMA-LGN/xtal/phenix/rosetta_refine_161</font></div><div style="margin: 0px; line-height: normal; min-height: 13px;" class=""><font face="Courier New" class=""><br class=""></font></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">&nbsp;&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; ----------Setting up input files for Rosetta---------- &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;</font></div><div style="margin: 0px; line-height: normal; min-height: 13px;" class=""><font face="Courier New" class=""><br class=""></font></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">/Applications/rosetta_src_2016.32.58837_bundle/main/source</font></div></div></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">/Applications/rosetta_src_2016.32.58837_bundle/main/source<br class="">|-starting model--------------------------------------------------------------|<br class="">| target_work(ml) = 6.38521&nbsp;&nbsp;r_work = 0.1996&nbsp;&nbsp;r_free = 0.2388&nbsp;&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;|<br class="">|-----------------------------------------------------------------------------|<br class=""><br class="">&nbsp;&nbsp;Validation statistics (starting model):<br class="">&nbsp; &nbsp;&nbsp;Ramachandran outliers =&nbsp;&nbsp;&nbsp;2.16 %<br class="">&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;favored =&nbsp;&nbsp;92.60 %<br class="">&nbsp; &nbsp;&nbsp;Rotamer outliers&nbsp; &nbsp; &nbsp;&nbsp;=&nbsp;&nbsp;&nbsp;4.46 %<br class="">&nbsp; &nbsp;&nbsp;C-beta deviations&nbsp;&nbsp; &nbsp;&nbsp;=&nbsp; &nbsp;&nbsp;92<br class="">&nbsp; &nbsp;&nbsp;Clashscore&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;=&nbsp;&nbsp;&nbsp;6.96<br class="">&nbsp; &nbsp;&nbsp;MolProbity score&nbsp; &nbsp; &nbsp;&nbsp;=&nbsp;&nbsp;&nbsp;2.34<br class=""><br class=""><br class="">Rosetta command-line arguments:<br class="">&nbsp;&nbsp;-parser:protocol /Applications/rosetta_src_2016.32.58837_bundle/main/source/src/apps/public/crystal_refinement/low_resolution_refine.xml<br class=""><br class=""></font></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">[…]</font></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class=""><br class=""></font></div><div style="margin: 0px; line-height: normal;" class=""><font face="Courier New" class="">&nbsp;&nbsp;-parser:script_vars bfactstrat=individual<br class="">&nbsp;&nbsp;-parser:script_vars map_type=Auto<br class="">&nbsp;&nbsp;-score:weights talaris2013_cart<br class="">&nbsp;&nbsp;-nstruct 1<br class="">&nbsp;&nbsp;-database /Applications/rosetta_src_2016.32.58837_bundle/main/database<br class=""><br class="">Generating 5 models on 5 processors...<br class=""><br class=""></font></div><div class=""><br class=""></div><div class="">Thanks again,</div><div class="">S</div><div class=""><br class=""></div><br class=""><div><blockquote type="cite" class=""><div class="">On 12 Sep 2016, at 17:09, Nigel Moriarty &lt;<a href="mailto:nwmoriarty@lbl.gov" class="">nwmoriarty@lbl.gov</a>&gt; wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Sebastiano<div class=""><br class=""></div><div class="">It's not a bother and I'm glad you find the solution. Can you email me directly with the version of XCode you have and whether&nbsp;</div><div class=""><br class=""></div><div class="">rosetta.run_tests</div><div class=""><br class=""></div><div class="">succeeds.</div><div class=""><div class=""><br class=""></div><div class=""><br class=""></div></div></div><div class="gmail_extra"><br clear="all" class=""><div class=""><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr" class=""><div class=""><div dir="ltr" class=""><div dir="ltr" class="">Cheers<div class=""><br class=""></div><div class="">Nigel<div class=""><br class=""></div><div class="">---</div><div class="">Nigel W. Moriarty<br class="">Building 33R0349,&nbsp;Molecular Biophysics and Integrated Bioimaging</div><div class="">Lawrence Berkeley National Laboratory<br class="">Berkeley, CA 94720-8235<br class="">Phone : 510-486-5709&nbsp; &nbsp;&nbsp; Email : <a href="mailto:NWMoriarty@lbl.gov" class="">NWMoriarty@LBL.gov</a><br class="">Fax&nbsp;&nbsp; : 510-486-5909&nbsp; &nbsp; &nbsp;&nbsp; Web&nbsp; : <a href="http://cci.lbl.gov/" target="_blank" class="">CCI.LBL.gov</a></div></div></div></div></div></div></div></div>
<br class=""><div class="gmail_quote">On Mon, Sep 12, 2016 at 7:39 AM, Sebastiano Pasqualato <span dir="ltr" class="">&lt;<a href="mailto:sebastiano.pasqualato@gmail.com" target="_blank" class="">sebastiano.pasqualato@gmail.com</a>&gt;</span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class=""><div class=""><br class=""></div><div class="">OK the problem seems to be solved by running:</div><div class=""><br class=""></div><div class="">xcode-select —install</div><div class=""><br class=""></div><div class="">thanks anyway,</div><div class="">sorry for bothering,</div><div class="">ciao,</div><div class="">S</div><div class=""><div class="h5"><br class=""><div class=""><blockquote type="cite" class=""><div class="">On 12 Sep 2016, at 16:22, Sebastiano Pasqualato &lt;<a href="mailto:sebastiano.pasqualato@gmail.com" target="_blank" class="">sebastiano.pasqualato@GMAIL.<wbr class="">COM</a>&gt; wrote:</div><br class=""><div class=""><div style="word-wrap:break-word" class=""><div class=""><br class=""></div><div class="">Hi there,</div><div class="">I am trying to run Phenix Rosetta Refinement on my laptop, which is running MacOSX 10.11.6 (El Capitan) with XQuartz&nbsp;2.7.9.</div><div class="">I have followed the instructions on this page:</div><div class=""><br class=""></div><div class=""><a href="https://www.phenix-online.org/documentation/reference/rosetta_refine.html" target="_blank" class="">https://www.phenix-online.org/<wbr class="">documentation/reference/<wbr class="">rosetta_refine.html</a></div><div class=""><br class=""></div><div class="">and specifically&nbsp;</div><div class=""><br class=""></div><font color="#0433ff" class="">Once you have both a Phenix installation and a Rosetta source distribution, you can build the hybrid system with this command (located in the&nbsp;Phenix tree):<br class=""><br class=""></font><div class=""><font color="#0433ff" class="">rosetta.build_phenix_interface nproc=X</font></div><br class="">Unfortunately, when I do that, the building does not proceed flawlessly, but instead stops with the message the I report below.<div class="">Has someone gone through the same and can tell me how to set up Rosetta to be used with Phenix?</div><div class=""><br class=""></div><div class="">Thanks in advance for the help,</div><div class="">Sebastiano</div><div class=""><br class=""></div><div class=""><div class=""><font face="Courier New" style="font-size:11px" class=""><b class="">Seba@host028:</b>~&gt;&nbsp;</font><span style="font-size:11px;font-family:'Courier New'" class="">rosetta.build_<wbr class="">phenix_interface nproc=8</span></div><div class=""><font face="Courier New" style="font-size:11px" class="">False</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">scons: Reading SConscript files ...</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">Running versioning script ... xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">Done. (0.0 seconds)</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">Number of option files updated: 0</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">Total 3741 options.</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">Finished updating ResidueProperty code -- no changes needed</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">Finished updating VariantType code -- no changes needed</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">scons: done reading SConscript files.</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">scons: Building targets ...</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/apps/<wbr class="">public/AbinitioRelax.o -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/apps/public/<a href="http://abinitiorelax.cc/" target="_blank" class="">AbinitioRelax.<wbr class="">cc</a></font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/devel/<wbr class="">init.os -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/devel/<a href="http://init.cc/" target="_blank" class="">init.cc</a></font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/devel/svn_<wbr class="">version.os -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/devel/svn_version.cc</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">init/init.os -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/protocols/init/<a href="http://init.cc/" target="_blank" class="">init.cc</a></font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/<wbr class="">DownstreamRMSEvaluator.os -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/protocols/match/output/<a href="http://downstreamrmsevaluator.cc/" target="_blank" class="">Dow<wbr class="">nstreamRMSEvaluator.cc</a></font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/<wbr class="">LimitHitsPerRotamerFilter.os -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/protocols/match/output/<a href="http://limithitsperrotamerfilter.cc/" target="_blank" class="">Lim<wbr class="">itHitsPerRotamerFilter.cc</a></font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/<wbr class="">MatchConsolidator.os -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/protocols/match/output/<a href="http://matchconsolidator.cc/" target="_blank" class="">Mat<wbr class="">chConsolidator.cc</a></font></div><div class=""><font face="Courier New" style="font-size:11px" class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/apps/<wbr class="">public/AbinitioRelax.o] Error 1</font></div><div class=""><font face="Courier New" style="font-size:11px" class="">clang++ -o build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/MatchEvaluator.os -c -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -std=c++11 -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_<wbr class="">DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_<wbr class="">MATH_FUNCTIONS -DCXX11 -DPTR_STD -DNDEBUG -DWITH_PYTHON=1 -Isrc -Iexternal/include -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include -Iexternal/include/python2.7 src/protocols/match/output/<a href="http://matchevaluator.cc/" target="_blank" class="">Mat<wbr class="">chEvaluator.cc</a></font></div><div class=""><font face="Courier New" class=""><span style="font-size:11px" class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/devel/<wbr class="">init.os] Error 1<br class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/devel/svn_<wbr class="">version.os] Error 1<br class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">init/init.os] Error 1<br class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/<wbr class="">DownstreamRMSEvaluator.os] Error 1<br class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/<wbr class="">LimitHitsPerRotamerFilter.os] Error 1<br class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/<wbr class="">MatchConsolidator.os] Error 1<br class="">xcrun: error: invalid active developer path (/Library/Developer/<wbr class="">CommandLineTools), missing xcrun at: /Library/Developer/<wbr class="">CommandLineTools/usr/bin/xcrun<br class="">scons: *** [build/src/release/macos/15.6/<wbr class="">64/x86/clang/python/protocols/<wbr class="">match/output/MatchEvaluator.<wbr class="">os] Error 1<br class="">scons: building terminated because of errors.<br class=""><b class="">Seba@host028</b>:~&gt;&nbsp;</span></font></div>
<br class=""><div class="">
<div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div class=""><div style="text-align:-webkit-auto;word-wrap:break-word" class="">--&nbsp;<br class=""><b class="">Sebastiano Pasqualato, PhD</b><br class="">Crystallography Unit<br class="">Department of Experimental Oncology<br class="">European Institute of Oncology<br class="">IFOM-IEO Campus<br class="">via Adamello, 16<br class="">20139 - Milano<br class="">Italy<br class=""><br class="">tel <a href="tel:%2B39%2002%209437%205167" value="+390294375167" target="_blank" class="">+39 02 9437 5167</a><br class="">fax <a href="tel:%2B39%2002%209437%205990" value="+390294375990" target="_blank" class="">+39 02 9437 5990</a></div><div style="text-align:-webkit-auto;word-wrap:break-word" class="">web&nbsp;<a href="http://is.gd/IEOXtalUnit" target="_blank" class="">http://is.gd/IEOXtalUnit</a></div></div></div></div>
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