<div dir="ltr">Hi Abhisek,<div><br></div><div>Can you provide the output to</div><div><br></div><div><font face="monospace, monospace">/usr/local/phenix-1.11.1-2575/base/bin/python /usr/local/phenix-1.11.1-2575/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-1.11.1-2575/build --command_version_suffix 1.11.1-2575 phenix phaser solve_resolve labelit</font><br></div><div><br></div><div><font face="arial, helvetica, sans-serif">That's the command that is failing, and I'm assuming you did not delete the installation directory that was created from running the install command.</font></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Thu, Nov 3, 2016 at 11:31 PM, abhisek Mondal <span dir="ltr"><<a href="mailto:abhisek.mndl@gmail.com" target="_blank">abhisek.mndl@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi,<div><br></div><div>The nightly build version is giving me the same error. I think something is going wrong during configuring the built.</div><div><br></div><div>Please have a look.</div><div>Thank you.</div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Nov 1, 2016 at 11:02 PM, Dr. Robert Oeffner <span dir="ltr"><<a href="mailto:rdo20@cam.ac.uk" target="_blank">rdo20@cam.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div dir="ltr">
<div style="FONT-SIZE:12pt;FONT-FAMILY:'Calibri';COLOR:#000000">
<div>Dear Abhisek,</div>
<div> </div>
<div>Version 1.10 is quite old and there have been several bug fixes and new
features since then. We’re just about to release version 1.11 so the current
nightly builds on the website should be quite stable. If you detect otherwise we
would be interested to hear back. </div>
<div> </div>
<div>Regards,</div>
<div> </div>
<div>Robert</div>
<div style="FONT-SIZE:small;TEXT-DECORATION:none;FONT-FAMILY:"Calibri";FONT-WEIGHT:normal;COLOR:#000000;FONT-STYLE:normal;DISPLAY:inline">
<div style="FONT:10pt tahoma">
<div> </div>
<div style="BACKGROUND:#f5f5f5">
<div><b>From:</b> <a title="abhisek.mndl@gmail.com">abhisek Mondal</a> </div>
<div><b>Sent:</b> Tuesday, November 1, 2016 5:07 PM</div>
<div><b>To:</b> <a title="rdo20@cam.ac.uk">rdo20@cam.ac.uk</a> ; <a title="phenixbb@phenix-online.org">phenixbb@phenix-online.org</a> </div>
<div><b>Subject:</b> RE: [phenixbb] phenix fails to configure on fedora
20</div></div></div>
<div> </div></div><div><div class="m_3840779762547509041h5">
<div style="FONT-SIZE:small;TEXT-DECORATION:none;FONT-FAMILY:"Calibri";FONT-WEIGHT:normal;COLOR:#000000;FONT-STYLE:normal;DISPLAY:inline">
<p dir="ltr">I'll try...<br>But, my concern is, when I tried to install the same
version in my workstation it worked cool.<br>Is this some sort of issue with my
laptop ?<br>Nightly builds are beta right ? Won't it cause any stability issue
?</p>
<div class="gmail_extra">
<div> </div>
<div class="gmail_quote">On Nov 1, 2016 3:07 PM, <<a>rdo20@cam.ac.uk</a>>
wrote:<br type="attribution">
<blockquote class="gmail_quote" style="PADDING-LEFT:1ex;BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex">
<div lang="EN-GB" vlink="#954F72" link="blue">
<div class="m_3840779762547509041m_-5085310955765059514m_6508730596873804886WordSection1">
<p class="MsoNormal">Have you tried one of the recent nightly builds or the
centos5 version?</p>
<p class="MsoNormal"><u></u><u></u> </p>
<p class="MsoNormal">Rob</p>
<p class="MsoNormal"><u></u><u></u> </p>
<p class="MsoNormal">Sent from my Windows 10 phone<br>-- <br>Robert Oeffner,
Ph.D.<br>Research Associate, The Read Group<br>Department of
Haematology,<br>Cambridge Institute for Medical Research<br>University of
Cambridge<br>Cambridge Biomedical Campus<br>Wellcome Trust/MRC
Building<br>Hills Road<br>Cambridge CB2 0XY<br><br><a href="http://www.cimr.cam.ac.uk/investigators/read/index.html" target="_blank">www.cimr.cam.ac.uk/investigato<wbr>rs/read/index.html</a><br>tel:
<a href="tel:%2B44%280%291223%20763234" value="+441223763234" target="_blank">+44(0)1223 763234</a><br>mobile: <a href="tel:%2B44%280%297712%20887162" value="+447712887162" target="_blank">+44(0)7712 887162</a></p>
<p class="MsoNormal"><u></u><u></u> </p>
<div style="BORDER-TOP:#e1e1e1 1pt solid;BORDER-RIGHT:medium none;BORDER-BOTTOM:medium none;PADDING-BOTTOM:0cm;PADDING-TOP:3pt;PADDING-LEFT:0cm;BORDER-LEFT:medium none;PADDING-RIGHT:0cm">
<p class="MsoNormal" style="BORDER-TOP:medium none;BORDER-RIGHT:medium none;BORDER-BOTTOM:medium none;PADDING-BOTTOM:0cm;PADDING-TOP:0cm;PADDING-LEFT:0cm;BORDER-LEFT:medium none;PADDING-RIGHT:0cm"><b>From:
</b><a>abhisek Mondal</a><br><b>Sent: </b>01 November 2016
07:39<br><b>To: </b><a>phenixbb@phenix-online.org</a><br><b>Subject: </b>[phenixbb]
phenix fails to configure on fedora 20</p></div>
<p class="MsoNormal"><u></u><u></u> </p>
<div>
<div>
<div>
<p class="MsoNormal">Hi,</p></div>
<div>
<p class="MsoNormal">I'm using Fedora 20 on a 4 core laptop. When I tried to
install phenix it gave following error.</p></div>
<div>
<p class="MsoNormal"><u></u><u></u> </p></div>
<div>
<p class="MsoNormal">Same version installed fine in my workstation but keep
failing here.</p></div>
<div>
<p class="MsoNormal"><u></u><u></u> </p></div>
<div>
<p class="MsoNormal">Please help me out here.</p></div>
<div>
<p class="MsoNormal">Thanks.</p></div></div>
<div>
<p class="MsoNormal"><u></u><u></u> </p></div>
<div>
<p class="MsoNormal"><u></u><u></u> </p></div>
<div>
<p class="MsoNormal"><b><i>[root@viralhost
phenix-installer-1.10.1-2155-i<wbr>ntel-linux-2.6-x86_64-centos6]<wbr>#
./install </i></b></p></div>
<div>
<p class="MsoNormal"><u></u><u></u> </p></div>
<div>
<p class="MsoNormal"><b><i>
==============================<wbr>==============================<wbr>==============</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
Phenix Installation</i></b></p></div>
<div>
<p class="MsoNormal"><u></u><u></u> </p></div>
<div>
<p class="MsoNormal"><b><i>
version: 1.10.1-2155</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
machine type: intel-linux-2.6</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
OS version: 3.19.8-100.fc20.i686</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
destination: /usr/local/phenix-1.10.1-2155</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
# of processors: 4</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
==============================<wbr>==============================<wbr>=============</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> </i></b></p></div>
<div>
<p class="MsoNormal"><b><i>Configuring Phenix components...</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>Traceback (most recent call last):</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> File "./bin/install.py", line 262, in
<module></i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
installer(sys.argv[1:]).instal<wbr>l()</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> File
"/home/abhisek/phenix-installe<wbr>r-1.10.1-2155-intel-linux-2.6-<wbr>x86_64-centos6/lib/libtbx/auto<wbr>_build/install_distribution.<wbr>py",
line 185, in install</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
self.install_from_binary()</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> File
"/home/abhisek/phenix-installe<wbr>r-1.10.1-2155-intel-linux-2.6-<wbr>x86_64-centos6/lib/libtbx/auto<wbr>_build/install_distribution.<wbr>py",
line 295, in install_from_binary</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>
self.reconfigure(log=log)</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> File
"/home/abhisek/phenix-installe<wbr>r-1.10.1-2155-intel-linux-2.6-<wbr>x86_64-centos6/lib/libtbx/auto<wbr>_build/install_distribution.<wbr>py",
line 460, in reconfigure</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> call(args=args, log=log,
verbose=self.options.verbose)</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> File
"/home/abhisek/phenix-installe<wbr>r-1.10.1-2155-intel-linux-2.6-<wbr>x86_64-centos6/lib/libtbx/auto<wbr>_build/installer_utils.py",
line 81, in call</i></b></p></div>
<div>
<p class="MsoNormal"><b><i> raise RuntimeError("Call to '%s'
failed with exit code %d" % (args, rc))</i></b></p></div>
<div>
<p class="MsoNormal"><b><i>RuntimeError: Call to
'/usr/local/phenix-1.10.1-2155<wbr>/base/bin/python
/usr/local/phenix-1.10.1-2155/<wbr>modules/cctbx_project/libtbx/c<wbr>onfigure.py
--current_working_directory /usr/local/phenix-1.10.1-2155/<wbr>build
--command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit'
failed with exit code 126</i></b></p></div>
<div>
<p class="MsoNormal"><u></u><u></u> </p></div>
<p class="MsoNormal">-- </p>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<p class="MsoNormal">Abhisek Mondal</p></div>
<div>
<p class="MsoNormal"><i>Research Fellow</i></p></div>
<div>
<p class="MsoNormal"><i>Structural Biology and Bioinformatics
Division</i></p></div>
<p class="MsoNormal"><i>CSIR-Indian Institute of Chemical Biology</i></p></div>
<p class="MsoNormal"><i>Kolkata
700032</i></p></div></div></div></div></div></div></div></div>
<p class="MsoNormal"><i>INDIA</i></p>
<p class="MsoNormal"><u></u><u></u> </p></div></div></blockquote></div></div></div></div></div></div></div></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="m_3840779762547509041gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div><div>Abhisek Mondal<br></div><div><i>Research Fellow<br></i></div><div><i>Structural Biology and Bioinformatics Division<br></i></div><i>CSIR-Indian Institute of Chemical Biology</i><br></div><i>Kolkata 700032<br></i></div><i>INDIA<br></i></div></div></div></div></div></div>
</div>
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