<div dir="ltr">Hi Taimin,<div><br></div><div>Also, you need to accept the licensing terms for Phenix before you can download it (<a href="http://www.phenix-online.org/phenix_request/index.cgi">http://www.phenix-online.org/phenix_request/index.cgi</a>). You have to use the email address from your academic institution.</div><div><br></div><div>You will then get a password which will allow you to download Phenix. We have precompiled packages or you can download the source and compile Phenix yourself.</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Wed, Nov 16, 2016 at 12:39 PM, R. D. Oeffner <span dir="ltr"><<a href="mailto:rdo20@cam.ac.uk" target="_blank">rdo20@cam.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">I don't think building Phenix with bootstrap is yet possible using only anonymous access to all the necessary repositories. Many repositories require authentication. However, it is possible to rebuild the Phenix C++ libraries in an existing Phenix installation.<br>
<br>
Regards,<br>
<br>
Rob<br>
<br>
-- <br>
Robert Oeffner, Ph.D.<br>
Research Associate, The Read Group<br>
Department of Haematology,<br>
Cambridge Institute for Medical Research<br>
University of Cambridge<br>
Cambridge Biomedical Campus<br>
Wellcome Trust/MRC Building<br>
Hills Road<br>
Cambridge CB2 0XY<br>
<br>
<a href="http://www.cimr.cam.ac.uk/investigators/read/index.html" rel="noreferrer" target="_blank">www.cimr.cam.ac.uk/investigato<wbr>rs/read/index.html</a><br>
tel: <a href="tel:%2B44%280%291223%20763234" value="+441223763234" target="_blank">+44(0)1223 763234</a><br>
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-----Original Message----- From: Taimin Yang<br>
Sent: Wednesday, November 16, 2016 8:20 PM<br>
To: <a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
Subject: [phenixbb] Why can't I use bootstrap.py in cctbx to compile phenix?<div><div class="h5"><br>
<br>
<br>
<br>
Dear Professor,<br>
<br>
<br>
My name is Taimin Yang and I am a PhD student in Stockholm University. I try to compile my own phenix using bootstrap.py but here is the error information:<br>
<br>
<br>
root@Linux-main:/usr/local/cry<wbr>stallography_software/phenix# python bootstrap.py --builder=phenix --with-python=/usr/local/anaco<wbr>nda2/bin/python hot update build<br>
Performing actions: hot update build<br>
Traceback (most recent call last):<br>
File "bootstrap.py", line 2034, in <module><br>
run()<br>
File "bootstrap.py", line 2029, in run<br>
enable_shared=options.enable_<wbr>shared,<br>
File "bootstrap.py", line 926, in __init__<br>
map(self.add_module, self.get_codebases())<br>
File "bootstrap.py", line 1051, in add_module<br>
action = MODULES.get_module(module)().g<wbr>et_url(auth=self.get_auth())<br>
File "bootstrap.py", line 553, in get_url<br>
raise Exception('No anonymous access method defined for module: %s. Try with --%s'%(self.module, e.args[0]))<br>
Exception: No anonymous access method defined for module: chem_data. Try with --cciuser<br>
<br>
What should I do to compile my own phenix?<br>
Thank you very much.<br>
<br>
Best regards,<br>
Taimin<br>
<br>
<br>
<br>
<br>
<br>
<br></div></div>
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