[x_marmo@triolith2 phenix-installer-1.11.1-2575-intel-linux-2.6-x86_64-centos6]$ ./install --prefix=/proj/xray/software/phenix/ ========================================================================== Phenix Installation version: 1.11.1-2575 machine type: intel-linux-2.6-x86_64 OS version: 2.6.32-642.6.2.el6.nsc1.x86_64 destination: /proj/xray/software/phenix/phenix-1.11.1-2575 # of processors: 16 ========================================================================= Configuring Phenix components... ********************************** * Finalizing Phenix installation * ********************************** Log file: /proj/xray/software/phenix/phenix-installer-1.11.1-2575-intel-linux-2.6-x86_64-centos6/base_tmp/install_finalize.log Generating Phenix environment setup scripts... Regenerating module files in /proj/xray/software/phenix/phenix-1.11.1-2575/base /proj/xray/software/phenix/phenix-1.11.1-2575/base/etc/pango not present, could not regenerate pango files generating gtk.immodules file generating gdk-pixbuf.loaders file updating fonts/local.conf file running mkfontscale/mkfontdir on /proj/xray/software/phenix/phenix-1.11.1-2575/base/share/fonts rebuilding font cache /proj/xray/software/phenix/phenix-1.11.1-2575/base/share/fonts: skipping, existing cache is valid: 10 fonts, 0 dirs /proj/xray/software/phenix/phenix-1.11.1-2575/base/var/cache/fontconfig: cleaning cache directory /home/x_marmo/.cache/fontconfig: cleaning cache directory /home/x_marmo/.fontconfig: cleaning cache directory /proj/xray/software/phenix/phenix-1.11.1-2575/base/bin/fc-cache: succeeded generating index.theme file Generating Phenix environment additions for dispatchers... Calling write_gui_dispatcher_include args ['--build_dir=/proj/xray/software/phenix/phenix-1.11.1-2575/build', '--base_dir=/proj/xray/software/phenix/phenix-1.11.1-2575/base', '--suffix=phenix', '--gtk_version=2.10.0', '--quiet'] prologue export PHENIX="/proj/xray/software/phenix/phenix-1.11.1-2575" export PHENIX_VERSION=1.11.1-2575 export PHENIX_ENVIRONMENT=1 export PHENIX_MTYPE=intel-linux-2.6-x86_64 epilogue if [ ! -z "$QB_PYTHONPATH" ]; then export PYTHONPATH=$PYTHONPATH:$QB_PYTHONPATH fi if [ ! -z "$QB_LD_LIBRARY_PATH" ]; then export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$QB_LD_LIBRARY_PATH fi if [ ! -z "$QB_DYLD_LIBRARY_PATH" ]; then export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:$QB_DYLD_LIBRARY_PATH fi if [ "$PHENIX_MTYPE" != "mac-ppc-osx" ] && \ [ "$PHENIX_MTYPE" != "mac-intel-osx" ] && \ [ "$PHENIX_MTYPE" != "mac-intel-osx-x86_64" ]; then export PYMOL_PATH=$PHENIX/pymol fi Configuring Phenix components... Precompiling .py files... Generating SOLVE/RESOLVE license file... Rebuilding HTML documentation... Creating rotamer/Ramachandran database files... ok Checking for monomer library files... ok PyMOL not available! ========================================================================== PHENIX installation complete ---------------------------- You can begin using PHENIX now by setting your environment with the 'source' command: csh users: source /proj/xray/software/phenix/phenix-1.11.1-2575/phenix_env.csh bash users: source /proj/xray/software/phenix/phenix-1.11.1-2575/phenix_env.sh To use PHENIX, go to a work directory and type: phenix You may wish to put the source statement in your .cshrc or .bashrc file. ************************** * Installation complete! * **************************