<div dir="ltr"><div>Hi Reza,<br></div><br>Actually Billy helped me solve this problem before. (Below is his previous reply) You just need to enable en_GB for the system. To do so,<div><br></div><div>1)
As root, open /etc/locale.gen and uncomment the entries with en_GB. On
my fresh install, I uncommented 3 entries, en_GB.ISO-8859-1,
en_GB.ISO-8859-15 ISO-8859-16, and en_GB.UTF-8 UTF-8.</div><div>2) Again as root, rebuild the locales with "locale-gen"</div><div>3) Try running the Phenix GUI normally.<br></div><div><br></div><div>Good luck,<br></div><div>Chen<br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Nov 23, 2016 at 10:44 AM, Reza Khayat <span dir="ltr"><<a href="mailto:rkhayat@ccny.cuny.edu" target="_blank">rkhayat@ccny.cuny.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr" style="font-size:12pt;color:#000000;background-color:#ffffff;font-family:Calibri,Arial,Helvetica,sans-serif">
<p>Hi Billy,</p>
<p><br>
CentOS 6 installer is giving me the same error. I've got the CLI version running, which is what I prefer. Nonetheless I'd like to get the GUI working as well.</p><span class="">
<p><br>
</p>
<p>Best wishes,</p>
<p>Reza<br>
</p>
<p><br>
</p>
<div id="m_5903767575646340650Signature">
<div name="divtagdefaultwrapper">
Reza Khayat, PhD
<div>Assistant Professor </div>
<div>City College of New York</div>
<div>Department of Chemistry</div>
<div>New York, NY 10031</div>
</div>
</div>
</span><div style="color:rgb(33,33,33)">
<hr style="display:inline-block;width:98%">
<div id="m_5903767575646340650divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b> Billy Poon <<a href="mailto:bkpoon@lbl.gov" target="_blank">bkpoon@lbl.gov</a>><br>
<b>Sent:</b> Wednesday, November 23, 2016 10:40 AM<div><div class="h5"><br>
<b>To:</b> Reza Khayat<br>
<b>Cc:</b> <a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<b>Subject:</b> Re: [phenixbb] Crashing Phenix</div></div></font>
<div> </div>
</div><div><div class="h5">
<div>
<div dir="ltr">Hi Reza,
<div><br>
</div>
<div>For Debian/Ubuntu, please try the CentOS 6 installer. That is more compatible with more recent linux distributions.</div>
</div>
<div class="gmail_extra"><br clear="all">
<div>
<div class="m_5903767575646340650gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div>
<div>--</div>
<div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br>
</div>
</div>
<div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div>
<div>Lawrence Berkeley National Laboratory</div>
<div>1 Cyclotron Road, M/S 33R0345</div>
<div>Berkeley, CA 94720</div>
<div>Tel: <a href="tel:%28510%29%20486-5709" value="+15104865709" target="_blank">(510) 486-5709</a></div>
<div>Fax: <a href="tel:%28510%29%20486-5909" value="+15104865909" target="_blank">(510) 486-5909</a></div>
<div>Web: <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__phenix-2Donline.org&d=CwMGaQ&c=-dg2m7zWuuDZ0MUcV7Sdqw&r=uV9bK9zAIvRZlk7q6-YllA&m=jrysqj80pOeXTSLseJNMrowB5CD05J12DnPWBeN8dcw&s=fFcd1sa5sv9wqvKImCCGltadANMuHn_KhVATvHangBc&e=" target="_blank">https://phenix-online.org</a></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
<div class="gmail_quote">On Tue, Nov 22, 2016 at 6:07 PM, Reza Khayat <span dir="ltr">
<<a href="mailto:rkhayat@ccny.cuny.edu" target="_blank">rkhayat@ccny.cuny.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr" style="font-size:12pt;color:#000000;background-color:#ffffff;font-family:Calibri,Arial,Helvetica,sans-serif">
<p>Debian 8 (jessie)<br>
</p>
<span>
<p><br>
</p>
<p><br>
</p>
<div id="m_5903767575646340650m_-2804053555685514328Signature">
<div name="divtagdefaultwrapper">Reza Khayat, PhD
<div>Assistant Professor </div>
<div>City College of New York</div>
<div>Department of Chemistry</div>
<div>New York, NY 10031</div>
</div>
</div>
</span>
<div style="color:rgb(33,33,33)">
<hr style="display:inline-block;width:98%">
<div id="m_5903767575646340650m_-2804053555685514328divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b> Billy Poon <<a href="mailto:bkpoon@lbl.gov" target="_blank">bkpoon@lbl.gov</a>><br>
<b>Sent:</b> Tuesday, November 22, 2016 6:04 PM
<div>
<div class="m_5903767575646340650h5"><br>
<b>To:</b> Reza Khayat<br>
<b>Cc:</b> <a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<b>Subject:</b> Re: [phenixbb] Crashing Phenix</div>
</div>
</font>
<div> </div>
</div>
<div>
<div class="m_5903767575646340650h5">
<div>
<div dir="ltr">Hi Reza,
<div><br>
</div>
<div>What is the linux distribution and version that you are using?</div>
</div>
<div class="gmail_extra"><br clear="all">
<div>
<div class="m_5903767575646340650m_-2804053555685514328gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div>
<div>--</div>
<div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br>
</div>
</div>
<div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div>
<div>Lawrence Berkeley National Laboratory</div>
<div>1 Cyclotron Road, M/S 33R0345</div>
<div>Berkeley, CA 94720</div>
<div>Tel: <a href="tel:%28510%29%20486-5709" value="&#43;15104865709" target="_blank">
(510) 486-5709</a></div>
<div>Fax: <a href="tel:%28510%29%20486-5909" value="&#43;15104865909" target="_blank">
(510) 486-5909</a></div>
<div>Web: <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__phenix-2Donline.org&d=CwMGaQ&c=-dg2m7zWuuDZ0MUcV7Sdqw&r=uV9bK9zAIvRZlk7q6-YllA&m=jrysqj80pOeXTSLseJNMrowB5CD05J12DnPWBeN8dcw&s=fFcd1sa5sv9wqvKImCCGltadANMuHn_KhVATvHangBc&e=" target="_blank">https://phenix-online.org</a></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
<div class="gmail_quote">On Tue, Nov 22, 2016 at 5:22 PM, Reza Khayat <span dir="ltr">
<<a href="mailto:rkhayat@ccny.cuny.edu" target="_blank">rkhayat@ccny.cuny.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr" style="font-size:12pt;color:#000000;background-color:#ffffff;font-family:Calibri,Arial,Helvetica,sans-serif">
<p>Hi,<br>
</p>
<p><br>
</p>
<p>Typing locale generates:<br>
</p>
<p>LANG=en_US.UTF-8<br>
</p>
<p>...<br>
</p>
<p>LC_ALL=<br>
</p>
<p><br>
</p>
<p>Running<br>
</p>
<pre class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316lang-bsh m_5903767575646340650m_-2804053555685514328m_-1278013642578234316prettyprint m_5903767575646340650m_-2804053555685514328m_-1278013642578234316prettyprinted" style="margin-top:0px;margin-bottom:1em;padding:5px;border:0px;font-size:13px;width:auto;max-height:600px;overflow:auto;font-family:Consolas,Menlo,Monaco,"Lucida Console","Liberation Mono","DejaVu Sans Mono","Bitstream Vera Sans Mono","Courier New",monospace,sans-serif;background-color:rgb(239,240,241);color:rgb(57,51,24);word-wrap:normal"><code style="margin:0px;padding:0px;border:0px;font-family:Consolas,Menlo,Monaco,"Lucida Console","Liberation Mono","DejaVu Sans Mono","Bitstream Vera Sans Mono","Courier New",monospace,sans-serif;white-space:inherit"><span class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316pln" style="margin:0px;padding:0px;border:0px;color:rgb(48,51,54)">sudo locale</span><span class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316pun" style="margin:0px;padding:0px;border:0px;color:rgb(48,51,54)">-</span><span class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316pln" style="margin:0px;padding:0px;border:0px;color:rgb(48,51,54)">gen </span><span class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316str" style="margin:0px;padding:0px;border:0px;color:rgb(125,39,39)">"en_US.UTF-8"</span></code><br></pre>
<p>does not change anything<br>
</p>
<p><br>
</p>
<p>modifying <span style="color:rgb(17,17,17);font-family:Consolas,Menlo,Monaco,"Lucida Console","Liberation Mono","DejaVu Sans Mono","Bitstream Vera Sans Mono","Courier New",monospace,sans-serif;font-size:13px;white-space:pre-wrap;background-color:rgb(239,240,241)">/etc/environment</span>
to include<br>
</p>
<pre style="margin-top:0px;margin-bottom:1em;padding:5px;border:0px;font-size:13px;width:auto;max-height:600px;overflow:auto;font-family:Consolas,Menlo,Monaco,"Lucida Console","Liberation Mono","DejaVu Sans Mono","Bitstream Vera Sans Mono","Courier New",monospace,sans-serif;background-color:rgb(239,240,241);word-wrap:normal;color:rgb(17,17,17)"><code style="margin:0px;padding:0px;border:0px;font-family:Consolas,Menlo,Monaco,"Lucida Console","Liberation Mono","DejaVu Sans Mono","Bitstream Vera Sans Mono","Courier New",monospace,sans-serif;white-space:inherit">LC_ALL=en_US.UTF-8
LANG=en_US.UTF-8</code><br></pre>
<p>Then Running locale indicates that LC_ALL=en_US.UTF-8. However, the problem persists. <br>
</p>
<span>
<p><br>
</p>
<p>Reza<br>
</p>
<p><br>
</p>
<p><br>
</p>
<div id="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316Signature">
<div name="divtagdefaultwrapper">Reza Khayat, PhD
<div>Assistant Professor </div>
<div>City College of New York</div>
<div>Department of Chemistry</div>
<div>New York, NY 10031</div>
</div>
</div>
</span>
<div style="color:rgb(33,33,33)">
<hr style="display:inline-block;width:98%">
<div id="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b> Billy Poon <<a href="mailto:bkpoon@lbl.gov" target="_blank">bkpoon@lbl.gov</a>><br>
<b>Sent:</b> Tuesday, November 22, 2016 4:57 PM<br>
<b>To:</b> Reza Khayat<br>
<b>Cc:</b> <a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<b>Subject:</b> Re: [phenixbb] Crashing Phenix</font>
<div> </div>
</div>
<div>
<div class="m_5903767575646340650m_-2804053555685514328h5">
<div>
<div dir="ltr">Hi Reza,
<div><br>
</div>
<div>Do you have the LANG or LC_ALL environment variables set? If you have LANG can you try setting LC_ALL to the same value? Also, make sure that there is a "UTF-8" somewhere. So for English (U.S.), LC_ALL should be set to en_US.UTF-8.</div>
</div>
<div class="gmail_extra"><br clear="all">
<div>
<div class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div>
<div>--</div>
<div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br>
</div>
</div>
<div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div>
<div>Lawrence Berkeley National Laboratory</div>
<div>1 Cyclotron Road, M/S 33R0345</div>
<div>Berkeley, CA 94720</div>
<div>Tel: <a href="tel:%28510%29%20486-5709" value="&#43;15104865709" target="_blank">
(510) 486-5709</a></div>
<div>Fax: <a href="tel:%28510%29%20486-5909" value="&#43;15104865909" target="_blank">
(510) 486-5909</a></div>
<div>Web: <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__phenix-2Donline.org&d=CwMGaQ&c=-dg2m7zWuuDZ0MUcV7Sdqw&r=uV9bK9zAIvRZlk7q6-YllA&m=jrysqj80pOeXTSLseJNMrowB5CD05J12DnPWBeN8dcw&s=fFcd1sa5sv9wqvKImCCGltadANMuHn_KhVATvHangBc&e=" target="_blank">https://phenix-online.org</a></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
<div class="gmail_quote">On Tue, Nov 22, 2016 at 3:38 PM, Reza Khayat <span dir="ltr">
<<a href="mailto:rkhayat@ccny.cuny.edu" target="_blank">rkhayat@ccny.cuny.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr" style="font-size:12pt;color:#000000;background-color:#ffffff;font-family:Calibri,Arial,Helvetica,sans-serif">
<p>Hi,</p>
<p><br>
</p>
<p>I recently installed phenix-1.11.1-2575 (CentOS 5 flavor) and am getting the following crashes when trying to launch the GUI.<br>
</p>
<p>15:31:23: Cannot set locale to language "English".<br>
15:31:23: locale 'en_GB' cannot be set.<br>
<br>
</p>
<p>phenix-1.10.1-2155 (on the same system) also gives me a locale 'en_GB' error but the GUI launches and I can run programs.</p>
<p><br>
</p>
<p>Any suggestions on how to fix this problem? Thanks.</p>
<p><br>
</p>
<p>Best wishes,<br>
Reza</p>
<div id="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316m_486986284685556905Signature">
<div name="divtagdefaultwrapper"><br>
Reza Khayat, PhD
<div>Assistant Professor </div>
<div>City College of New York</div>
<div>Department of Chemistry</div>
<div>New York, NY 10031</div>
</div>
</div>
<div style="color:rgb(33,33,33)">
<hr style="display:inline-block;width:98%">
<div id="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316m_486986284685556905divRplyFwdMsg" dir="ltr">
<font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>From:</b>
<a href="mailto:phenixbb-bounces@phenix-online.org" target="_blank">phenixbb-bounces@phenix-online<wbr>.org</a> <<a href="mailto:phenixbb-bounces@phenix-online.org" target="_blank">phenixbb-bounces@phenix-onlin<wbr>e.org</a>> on behalf of Pavel Afonine <<a href="mailto:pafonine@lbl.gov" target="_blank">pafonine@lbl.gov</a>><br>
<b>Sent:</b> Wednesday, August 3, 2016 7:39 AM<br>
<b>To:</b> <a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<b>Subject:</b> Re: [phenixbb] Realspace refinement</font>
<div> </div>
</div>
<div>
<p>Hi Reza,<br>
</p>
yes, it does.<br>
<br>
Pavel<br>
<br>
<div class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316m_486986284685556905moz-cite-prefix">
On 8/1/16 04:16, Reza Khayat wrote:<br>
</div>
<blockquote type="cite">
<div class="m_5903767575646340650m_-2804053555685514328m_-1278013642578234316m_486986284685556905WordSection1">
<p class="MsoNormal">Hi,</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Does realspace refinement consider temperature factors during refinement? Thanks.</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal">Best wishes,<br>
Reza</p>
<p class="MsoNormal"> </p>
<p class="MsoNormal"><span style="color:#1f497d">Reza Khayat, PhD</span><span style="color:#212121"></span></p>
<p class="MsoNormal"><span style="color:#1f497d">Assistant Professor</span><span style="color:#212121"></span></p>
<p class="MsoNormal"><span style="color:#1f497d">Department of Chemistry</span><span style="color:#212121"></span></p>
<p class="MsoNormal"><span style="color:#1f497d">City College of New York</span></p>
<p class="MsoNormal"><span style="color:#1f497d">85 Saint Nicholas Terrace, CDI 2.318</span><span style="color:#212121"></span></p>
<p class="MsoNormal"><span style="color:#1f497d">New York, NY 10031</span><span style="color:#212121"></span></p>
<p class="MsoNormal"><span style="color:#1f497d"><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__www.khayatlab.org_&d=CwMGaQ&c=-dg2m7zWuuDZ0MUcV7Sdqw&r=uV9bK9zAIvRZlk7q6-YllA&m=jrysqj80pOeXTSLseJNMrowB5CD05J12DnPWBeN8dcw&s=6rOWtgyU_jNmxc8udCzO4Wip1A6_25yrlispGBENJiM&e=" target="_blank"><span style="color:#0563c1">http://www.khayatlab.org/</span></a></span><span style="color:#212121"></span></p>
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<p class="MsoNormal"> </p>
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<br>
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