<div dir="ltr">Hi Everyone,<div><br></div><div>I am trying to run Phenix's rosetta refine. I seem to have downloaded and compiled the rosetta package fine, as I got the following statement after compiling was done:</div><div>
<p class="gmail-p1"><span class="gmail-s1">scons: done building targets.</span></p></div><div> but I am failing at running: <span style="color:rgb(0,0,0)">rosetta.build_phenix_interface.</span></div><div><span style="color:rgb(0,0,0)">It says that command not found. I am attaching my env page with this email. </span></div><div><span style="color:rgb(0,0,0)"><br></span></div><div>
<p class="gmail-p1"><span class="gmail-s1">bmbs-imac:rosetta_bin_mac_2016.32.58837_bundle Kumar$ env</span></p>
<p class="gmail-p1"><span class="gmail-s1">ROSETTA3_DB=/Applications/rosetta_bin_mac_2016.32.58837_bundle/PHENIX_ROSETTA_PATH//main/database</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM_PROGRAM=Apple_Terminal</span></p>
<p class="gmail-p1"><span class="gmail-s1">SHELL=/bin/bash</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM=xterm-256color</span></p>
<p class="gmail-p1"><span class="gmail-s1">TMPDIR=/var/folders/cb/5v492std3d31jr42j7h3jm9h0000gp/T/</span></p>
<p class="gmail-p1"><span class="gmail-s1">Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.KEC4L2Cjos/Render</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM_PROGRAM_VERSION=387</span></p>
<p class="gmail-p1"><span class="gmail-s1">OLDPWD=/Applications</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM_SESSION_ID=A82EA51D-0920-4F3B-BE03-92AE0C40A44B</span></p>
<p class="gmail-p1"><span class="gmail-s1">USER=Kumar</span></p>
<p class="gmail-p1"><span class="gmail-s1">SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.tMihawGOC7/Listeners</span></p>
<p class="gmail-p1"><span class="gmail-s1">__CF_USER_TEXT_ENCODING=0x1F6:0x0:0x0</span></p>
<p class="gmail-p1"><span class="gmail-s1">ROSETTA_BIN=/Applications/rosetta_bin_mac_2016.32.58837_bundle/PHENIX_ROSETTA_PATH//main/source/bin</span></p>
<p class="gmail-p1"><span class="gmail-s1">PATH=/Library/Frameworks/Python.framework/Versions/3.5/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/Users/Kumar/miniconda2/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin</span></p>
<p class="gmail-p1"><span class="gmail-s1">PWD=/Applications/rosetta_bin_mac_2016.32.58837_bundle</span></p>
<p class="gmail-p1"><span class="gmail-s1">LANG=en_US.UTF-8</span></p>
<p class="gmail-p1"><span class="gmail-s1">XPC_FLAGS=0x0</span></p>
<p class="gmail-p1"><span class="gmail-s1">XPC_SERVICE_NAME=0</span></p>
<p class="gmail-p1"><span class="gmail-s1">SHLVL=1</span></p>
<p class="gmail-p1"><span class="gmail-s1">HOME=/Users/Kumar</span></p>
<p class="gmail-p1"><span class="gmail-s1">LOGNAME=Kumar</span></p>
<p class="gmail-p1"><span class="gmail-s1">DISPLAY=/private/tmp/com.apple.launchd.BhETYwyInl/org.macosforge.xquartz:0</span></p>
<p class="gmail-p1"><span class="gmail-s1">PHENIX_ROSETTA_PATH=/Applications/rosetta_bin_mac_2016.32.58837_bundle/PHENIX_ROSETTA_PATH/</span></p>
<p class="gmail-p1"><span class="gmail-s1">_=/usr/bin/env</span></p>
<p class="gmail-p1"><span class="gmail-s1">bmbs-imac:rosetta_bin_mac_2016.32.58837_bundle Kumar$ env</span></p>
<p class="gmail-p1"><span class="gmail-s1">ROSETTA3_DB=/Applications/rosetta_bin_mac_2016.32.58837_bundle/PHENIX_ROSETTA_PATH//main/database</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM_PROGRAM=Apple_Terminal</span></p>
<p class="gmail-p1"><span class="gmail-s1">SHELL=/bin/bash</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM=xterm-256color</span></p>
<p class="gmail-p1"><span class="gmail-s1">TMPDIR=/var/folders/cb/5v492std3d31jr42j7h3jm9h0000gp/T/</span></p>
<p class="gmail-p1"><span class="gmail-s1">Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.KEC4L2Cjos/Render</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM_PROGRAM_VERSION=387</span></p>
<p class="gmail-p1"><span class="gmail-s1">OLDPWD=/Applications</span></p>
<p class="gmail-p1"><span class="gmail-s1">TERM_SESSION_ID=A82EA51D-0920-4F3B-BE03-92AE0C40A44B</span></p>
<p class="gmail-p1"><span class="gmail-s1">USER=Kumar</span></p>
<p class="gmail-p1"><span class="gmail-s1">SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.tMihawGOC7/Listeners</span></p>
<p class="gmail-p1"><span class="gmail-s1">__CF_USER_TEXT_ENCODING=0x1F6:0x0:0x0</span></p>
<p class="gmail-p1"><span class="gmail-s1">ROSETTA_BIN=/Applications/rosetta_bin_mac_2016.32.58837_bundle/PHENIX_ROSETTA_PATH//main/source/bin</span></p>
<p class="gmail-p1"><span class="gmail-s1">PATH=/Library/Frameworks/Python.framework/Versions/3.5/bin:/Library/Frameworks/Python.framework/Versions/3.5/bin:/Users/Kumar/miniconda2/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin</span></p>
<p class="gmail-p1"><span class="gmail-s1">PWD=/Applications/rosetta_bin_mac_2016.32.58837_bundle</span></p>
<p class="gmail-p1"><span class="gmail-s1">LANG=en_US.UTF-8</span></p>
<p class="gmail-p1"><span class="gmail-s1">XPC_FLAGS=0x0</span></p>
<p class="gmail-p1"><span class="gmail-s1">XPC_SERVICE_NAME=0</span></p>
<p class="gmail-p1"><span class="gmail-s1">SHLVL=1</span></p>
<p class="gmail-p1"><span class="gmail-s1">HOME=/Users/Kumar</span></p>
<p class="gmail-p1"><span class="gmail-s1">LOGNAME=Kumar</span></p>
<p class="gmail-p1"><span class="gmail-s1">DISPLAY=/private/tmp/com.apple.launchd.BhETYwyInl/org.macosforge.xquartz:0</span></p>
<p class="gmail-p1"><span class="gmail-s1">PHENIX_ROSETTA_PATH=/Applications/rosetta_bin_mac_2016.32.58837_bundle/PHENIX_ROSETTA_PATH/</span></p>
<p class="gmail-p1"><span class="gmail-s1">_=/usr/bin/env</span></p>
<p class="gmail-p1"><span class="gmail-s1">bmbs-imac:rosetta_bin_mac_2016.32.58837_bundle Kumar$ </span></p></div></div>