<div dir="ltr">You can test the installation using<div><br></div><div>rosetta.run_tests</div><div><br></div><div>Also, are you sure you ran MR Rosetta as it looks like you tried to run phenix.rosetta_refine.</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div dir="ltr">Cheers<div><br></div><div>Nigel<div><br></div><div>---</div><div>Nigel W. Moriarty<br>Building 33R0349, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709 Email : NWMoriarty@LBL.gov<br>Fax : 510-486-5909 Web : <a href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Thu, Feb 23, 2017 at 5:55 AM, <span dir="ltr"><<a href="mailto:pravin.jagtap@embl.de" target="_blank">pravin.jagtap@embl.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><u></u><div><div style="font-family:Tahoma;font-size:16px;direction:ltr"><br>Hi All,<br>I want to do phenix.rosetta refinement. I was successful in compiling rosetta and build the rosetta_refine interface. However when I try to do the refinement, I get the following error. I get the similar error in Rosetta_MR. Please let me know if you need any other information.<br><br>Thanks and regards,<br>Pravin.<br><br><div></div>RuntimeError : Aborted due to error in job 1.<br>Traceback:<br> File "/struct/jhennig/jagtap/<wbr>softwares/phenix-dev-2689/<wbr>modules/cctbx_project/libtbx/<wbr>runtime_utils.py", line 179, in run<br> return_value = self.target()<br><br> File "/struct/jhennig/jagtap/<wbr>softwares/phenix-dev-2689/<wbr>modules/cctbx_project/libtbx/<wbr>runtime_utils.py", line 74, in __call__<br> result = self.run()<br><br> File "/struct/jhennig/jagtap/<wbr>softwares/phenix-dev-2689/<wbr>modules/phenix/phenix/command_<wbr>line/rosetta_refine.py", line 302, in run<br> return run(args=list(self.args))<br><br> File "/struct/jhennig/jagtap/<wbr>softwares/phenix-dev-2689/<wbr>modules/phenix/phenix/command_<wbr>line/rosetta_refine.py", line 191, in run<br> debug=params.output.debug)<br><br> File "/struct/jhennig/jagtap/<wbr>softwares/phenix-dev-2689/<wbr>modules/phenix/phenix/rosetta/<wbr>refine.py", line 313, in __init__<br> self.run_jobs()<br><br> File "/struct/jhennig/jagtap/<wbr>softwares/phenix-dev-2689/<wbr>modules/phenix/phenix/rosetta/<wbr>refine.py", line 397, in run_jobs<br> check_result(result)<br><br> File "/struct/jhennig/jagtap/<wbr>softwares/phenix-dev-2689/<wbr>modules/phenix/phenix/rosetta/<wbr>refine.py", line 379, in check_result<br> raise RuntimeError("Aborted due to error in job %d." % result.job_id)<br><br><br><br>Platform info:<br>__FILE__ = /home/builder/slave/phenix-<wbr>nightly-intel-linux-2_6-x86_<wbr>64-centos6/modules/cctbx_<wbr>project/boost_adaptbx/meta_<wbr>ext.cpp<br>__DATE__ = Feb 18 2017<br>__TIME__ = 00:45:46<br>__TIMESTAMP__ = Tue Nov 8 23:38:16 2016<br>__x86_64__<br>__linux<br>__GNUC__ = 4<br>__GNUC_MINOR__ = 4<br>__GNUC_PATCHLEVEL__ = 7<br>boost::python::cxxabi_cxa_<wbr>demangle_is_broken(): false<br>__GXX_WEAK__ = 1<br>__LP64__ = 1<br>__VERSION__ = 4.4.7 20120313 (Red Hat 4.4.7-16)<br>FE_INEXACT = 32<br>FE_DIVBYZERO = 4<br>FE_UNDERFLOW = 16<br>FE_OVERFLOW = 8<br>FE_INVALID = 1<br>FE_ALL_EXCEPT = 61<br>__SSE2__ = 1<br>BOOST_LIB_VERSION = 1_55<br>PY_VERSION = 2.7.8<br>PYTHON_API_VERSION = 1013<br>sizeof(bool) = 1<br>sizeof(short) = 2<br>sizeof(int) = 4<br>sizeof(long) = 8<br>sizeof(std::size_t) = 8<br>sizeof(void*) = 8<br>sizeof(long long) = 8<br>sizeof(float) = 4<br>sizeof(double) = 8<br>sizeof(long double) = 16<br>sizeof(boost::int32_t) = 4<br>sizeof(boost::uint32_t) = 4<br>sizeof(wchar_t) = 4<br>__PTRDIFF_TYPE__<br>Py_USING_UNICODE<br>sizeof(PY_UNICODE_TYPE) = 2<br>_OPENMP = 200805<br>gnu libc version: 2.17<br>BOOST_ADAPTBX_TYPE_ID_SIZE_T_<wbr>EQ_UNSIGNED_LONG<br>boost/TAG: 86799<br><a href="http://os.name" target="_blank">os.name</a>: posix<br>sys.platform: linux2<br>sys.byteorder: little<br>platform.platform(): Linux-3.10.0-514.6.1.el7.x86_<wbr>64-x86_64-with-centos-7.3.<wbr>1611-Core<br>platform.architecture(): ('64bit', 'ELF')<br>floating_point_exceptions.<wbr>division_by_zero_trapped: False<br>floating_point_exceptions.<wbr>invalid_trapped: False<br>floating_point_exceptions.<wbr>overflow_trapped: False<br>number of processors: 8<br>Memory total: 8,292,691,968<br>Memory free: 703,213,568<br>import thread: OK<br>"hello" = ['h', 'e', 'l', 'l', 'o']<br>u"hello" = ['h', '\x00', 'e', '\x00', 'l', '\x00', 'l', '\x00', 'o', '\x00']<br>u"\u00C5" = ['\xc5', '\x00'] as utf-8 = ['\xc3', '\x85']<br>LATIN CAPITAL LETTER A WITH RING ABOVE = Å<br><br></div></div>
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