<div dir="ltr">Hi Jiemin,<div><br></div><div>You have atoms sitting on top of each other in your model. They are listed just above the mentioned error message. Please check your model and get rid of these atoms.</div><div><br></div><div>Best regards,</div><div>Oleg Sobolev.</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Sep 22, 2017 at 9:16 AM, Jiemin Zhao <span dir="ltr"><<a href="mailto:zhao447@purdue.edu" target="_blank">zhao447@purdue.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div id="m_-8492988276754700906divtagdefaultwrapper" style="font-size:12pt;color:#000000;font-family:Calibri,Helvetica,sans-serif" dir="ltr">
<p></p>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
Hi，</div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px"><br>
</span></font></div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px">I got an error message when I try to refine a molecular replacement result. It says "number of nonbonded interaction distances<0.001:10. Please inspect the out
put above(or in the log window) and correct the input model file."</span></font></div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px">Could you help me with this problem? </span></font><span style="font-family:Calibri,Helvetica,sans-serif,serif,EmojiFont">The error happens when I add Mg
to pdb file.</span></div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px"><br>
</span></font></div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px">Thanks!</span></font></div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px"><br>
</span></font></div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px">Best regards,</span></font></div>
<div style="font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;font-size:16px;margin-top:0px;margin-bottom:0px">
<font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px">Jiemin</span></font></div>
<div><font face="Calibri,Helvetica,sans-serif,serif,EmojiFont" size="2"><span style="font-size:16px"><br>
</span></font></div>
<br>
<p></p>
</div>
</div>
<br>______________________________<wbr>_________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" rel="noreferrer" target="_blank">http://phenix-online.org/<wbr>mailman/listinfo/phenixbb</a><br>
Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org">phenixbb-leave@phenix-online.<wbr>org</a><br></blockquote></div><br></div>