<div dir="ltr"><div><div>I'll take a look. Thanks for noticing!<br><br></div>-Christopher Williams<br></div>---Richardson Lab<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Oct 9, 2017 at 12:44 PM, Pavel Afonine <span dir="ltr"><<a href="mailto:pafonine@lbl.gov" target="_blank">pafonine@lbl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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Hi Boaz,<br>
<br>
I had to disable it because it required re-calculation of all other
Molprobity metrics twice, which it time waste. <br>
<br>
@developers: Can someone from Richardson Lab fix this?<br>
<br>
Pavel<div><div class="h5"><br>
<br>
<br>
<div class="m_-2845444149976391297moz-cite-prefix">On 10/9/17 09:35, Boaz Shaanan wrote:<br>
</div>
</div></div><blockquote type="cite"><div><div class="h5">
<div style="direction:ltr;font-family:Arial;color:#0000ff;font-size:10pt">Hi,<br>
<br>
I noticed a small change in output pdb between these two
versions in the molprobity report (these are two different
runs, so ignore the numerical values)t:<br>
<br>
<div><u>dev-2919:</u></div>
<div><br>
</div>
<div>REMARK 3 REMARK 3 <br>
REMARK 3 MOLPROBITY STATISTICS.<br>
REMARK 3 ALL-ATOM CLASHSCORE : 3.13<br>
RAMACHANDRAN PLOT:<br>
REMARK 3 OUTLIERS : 0.46 %<br>
REMARK 3 ALLOWED : 3.24 %<br>
REMARK 3 FAVORED : 96.30 %<br>
<div style="font-family:Tahoma;font-size:13px"><br>
</div>
<div style="font-family:Tahoma;font-size:13px"><u>dev-2873:</u></div>
<div style="font-family:Tahoma;font-size:13px"><br>
</div>
<div style="font-family:Tahoma;font-size:13px">REMARK 3
MOLPROBITY STATISTICS.<br>
REMARK 3 ALL-ATOM CLASHSCORE : 2.56<br>
<font color="FF0000">REMARK 3 MOLPROBITY SCORE :
1.24 This line is missing from the newer version</font><br>
REMARK 3 RAMACHANDRAN PLOT:<br>
REMARK 3 OUTLIERS : 0.46 %<br>
REMARK 3 ALLOWED : 2.78 %<br>
REMARK 3 FAVORED : 96.76 %<br>
<br>
</div>
<div style="font-family:Tahoma;font-size:13px">I am just
wondering whether this change is intentional.</div>
<div style="font-family:Tahoma;font-size:13px"><br>
</div>
<div style="font-family:Tahoma;font-size:13px"> Cheers,</div>
<div style="font-family:Tahoma;font-size:13px"><br>
</div>
<div style="font-family:Tahoma;font-size:13px">
Boaz<br>
<div> </div>
<div><font size="3" face="Times New Roman" color="#000080"><em>Boaz
Shaanan, Ph.D. <wbr>
<br>
Dept. of Life
Sciences <wbr> <br>
Ben-Gurion University of the
Negev <br>
Beer-Sheva
84105 <wbr> <br>
Israel <wbr> <br>
<wbr> <br>
E-mail: <a class="m_-2845444149976391297moz-txt-link-abbreviated" href="mailto:bshaanan@bgu.ac.il" target="_blank">bshaanan@bgu.ac.il</a><br>
Phone: 972-8-647-2220 Skype:
boaz.shaanan <br>
Fax: 972-8-647-2992 or 972-8-646-1710 </em></font></div>
<div><font size="3" face="Times New Roman" color="#000080"><em></em></font> </div>
<div><font size="3" face="Times New Roman" color="#000080"><em></em></font> </div>
<div><font size="3" face="Times New Roman"><em><font color="#000080">
<br>
<br>
</font></em></font></div>
</div>
</div>
</div>
<br>
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